Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d15
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.044
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               35   0.058
SB_9163| Best HMM Match : XS (HMM E-Value=0.84)                        33   0.18 
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           32   0.41 
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.95 
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         28   8.9  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 74   CPPVCSPPDCRPICGPASPLLCQSSVPP 157
            CP  CSP  CRP C    PL+C S  PP
Sbjct: 1669 CPATCSPDSCRPEC----PLICCSVCPP 1692



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 77   PPVCSPPDCRPICGPASPLLCQSSVPPTQRC 169
            PPV  P  C   C P  P++C  +  P   C
Sbjct: 1795 PPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825



 Score = 25.8 bits (54), Expect(2) = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 68   GYCPPVCSPPDCRPIC 115
            G CP  C P +C+P C
Sbjct: 1456 GECPAGCLPSNCKPDC 1471



 Score = 21.0 bits (42), Expect(2) = 5.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 92   PPDCRPICGPASPLLC 139
            P DC   C P  P+ C
Sbjct: 1494 PSDCFESCKPNCPIKC 1509


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 71  YCPPVCSPPDCRPICGPASPLL--CQSSVPPTQRC 169
           Y PP  +P  C P C P SP+   CQSS  PT+ C
Sbjct: 285 YQPPPMAPMGCAPQCSPVSPMFMGCQSSC-PTRCC 318


>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
          Length = 424

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 68  GYCPPVCSPPDCRPICGPASPLLCQSSVPP 157
           G C P C+P  C P+C  ++ LL Q+ +PP
Sbjct: 302 GSCLPACAP-GCNPLCCSSTSLLHQNRIPP 330


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 110 ICGPASPLLCQSSVPPTQRCY 172
           +CG +  LLC+  VPP  RCY
Sbjct: 555 VCGESKCLLCKEMVPPDHRCY 575


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 77   PPVCSPPDCRPICGPASPLLCQSSVP 154
            PP   PP C P+C  A+P  C ++ P
Sbjct: 1518 PPAPPPPVCMPMCAVAAPAPCPAACP 1543


>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1747

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 134  LCQSSVPPTQRCYPVNPCINIYSCYTQI 217
            L ++  PP +RC P NPC++   CY  +
Sbjct: 988  LYEAVFPPEKRCKPHNPCLHGGKCYETV 1015


>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 41  VYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINI 196
           +Y+  K     C PV +   C P+     P+   S  P    C PVN C+N+
Sbjct: 112 IYREDKPVNNSCEPVNN--SCEPVNNSCEPVN-NSCEPVNNSCEPVNNCVNM 160


>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 529 IARLIYHVKIFYINYEQIIAICFYFGILMSFDFMYIYSYVSTVEF 663
           I  L+YH+  F +N     A+C    + + F  +  + +++ + F
Sbjct: 452 ITMLLYHLLYFLVNQSDTRALCVAVAVSLHFALLSAFCWMNVLAF 496


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  PPDCRPICGPASPLLCQSSVPPTQR 166
           P  C+P+  P  P++C+ ++P   R
Sbjct: 795 PGKCKPVESPVDPVICRGTLPNPSR 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,637
Number of Sequences: 59808
Number of extensions: 380925
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)