BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte11d14 (721 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 29 0.51 SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.67 SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.88 SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 27 2.7 SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 3.6 SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.6 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.6 SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 4.7 SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 26 6.2 SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 6.2 SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 8.2 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.2 SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 8.2 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.2 >SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 29.5 bits (63), Expect = 0.51 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Frame = +1 Query: 280 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSK--RWSGPGGTV--NRKELIDKQKEL 447 P +R+ +++ +E LS E+TE+YF+ +S+ W+ P V +R+EL + +E Sbjct: 115 PLQRQVRVEGIIER---LSREETEEYFKTRPRNSRIGAWASPQSEVIADREELEKRVEEY 171 Query: 448 QQR 456 +++ Sbjct: 172 KKK 174 >SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces pombe|chr 2|||Manual Length = 1142 Score = 29.1 bits (62), Expect = 0.67 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = -1 Query: 625 DSTEMVSVLPIFQRLSPAQRQRCF---STCSILASLFVLLLCN 506 D E+V V + LSP+ R + + + CS LA L+ LL+CN Sbjct: 537 DLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCN 579 >SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1079 Score = 28.7 bits (61), Expect = 0.88 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +1 Query: 427 IDKQKELQQRQKWLVNFSAQVAYHLCDYIAKGQKEMLVSNRLRSIADVVL 576 +D+ E Q + FSA V YHL D QK++L R S +DV + Sbjct: 894 VDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQKKILEQKREES-SDVAV 942 >SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 27.1 bits (57), Expect = 2.7 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +1 Query: 136 KILKKVDSEGSNQKIPPRL-RRNMERVEMLAR-PTARRLRSLWDEKCAILPPERRDKIKS 309 K K VD+E N K PP L ++E ++ A P AR L ++ ++ A+L +R + Sbjct: 9 KYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVL--KRINDTVG 66 Query: 310 ALEEDYFLSP 339 E D L+P Sbjct: 67 IKESDTGLAP 76 >SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 926 Score = 26.6 bits (56), Expect = 3.6 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = +1 Query: 355 YFQALSESSKR--WSGPGGTVNRKEL-IDKQKELQQRQKWLVNFSAQVAYH 498 Y L E+ +R W + L +D++KEL R+ WL +FS + H Sbjct: 362 YIDILMEALRRTEWQESYNVSHDSSLPLDQEKELSLRKSWLSHFSNLLFNH 412 >SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 26.6 bits (56), Expect = 3.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 409 VNRKELIDKQKELQQRQKWLVNFSAQVAYHLCDYI 513 VN+ I K+K L+ R K L++ + V +HL +I Sbjct: 121 VNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFI 155 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 26.6 bits (56), Expect = 3.6 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +1 Query: 37 KQIMPKTGKKLENKPEPLKSSKPELATDSEQNVKILK--KVDSEGSNQKIPPRLRRNMER 210 +++ P ++L+ E L+ K EL T ++ K K N+++ L++ +E+ Sbjct: 1347 ERVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVE-NLKKEVEQ 1405 Query: 211 VEMLARPTARRLRSLWDEKC 270 A RL + W+EKC Sbjct: 1406 ----ANTKNTRLAAAWNEKC 1421 >SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Spt6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1365 Score = 26.2 bits (55), Expect = 4.7 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 52 KTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPPRLRRNMER 210 K G L+N + SS+ E ATD E ++ + E ++P +RR +R Sbjct: 40 KDGIPLDNDNDENDSSE-ESATDEEAERQVREGFIVEDEEDEVPQEIRRKKKR 91 >SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 356 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 Query: 607 KPSRSNPGRLARFMVAISDRIAVWIENAV 693 KP+RS RL V D +WI N V Sbjct: 167 KPARSKHCRLCNICVEKFDHHCIWINNCV 195 >SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 777 Score = 25.8 bits (54), Expect = 6.2 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = +1 Query: 37 KQIMPKTGKKLEN-KPEPLKSSKPELATDSEQNVKILKKVDSEGSNQ-KIPPRLRRNME 207 K+ + G+KL+ E LK KPE D + K + + SE +NQ K R+ +++E Sbjct: 43 KEANEEFGEKLQEITKECLKGKKPENTEDGATSNKAFEGLRSEIANQGKQHIRIAKDLE 101 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 25.4 bits (53), Expect = 8.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +1 Query: 67 LENKPEPLKSSKPELATDSEQNVKILK 147 ++NK PL+SS EL+T ++ + + K Sbjct: 1 MKNKDYPLRSSMDELSTKNDNEIDLEK 27 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 25.4 bits (53), Expect = 8.2 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +1 Query: 49 PKTGKKLENKPEPLKSSKPELATDSEQNVKILKKVDSEGSNQKIPP 186 PK L P P + P +T++ Q + V++ GS IPP Sbjct: 229 PKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP 274 >SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 25.4 bits (53), Expect = 8.2 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Frame = +1 Query: 103 PELATDSE-QNVKILKKVDSEGSNQKIPPRLRRNMERVEMLARPTARRLRSLWDEKCAIL 279 P L + E N ++ ++ G + P L+ E A ARR + L + +L Sbjct: 280 PSLGKNGEGSNESVIMRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRLGE----LL 335 Query: 280 PPERRDKIKSALEEDYFLSPEQTEQYFQALSESSKRWS 393 + + + L D SPE+ + AL SK WS Sbjct: 336 TGKHCSECGTPLYSDP--SPEELGIWLHALKYESKDWS 371 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 25.4 bits (53), Expect = 8.2 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 104 RNWQQIPNRM*KF*KRWILKEVTRKY 181 R W IP+ F K WI++++ KY Sbjct: 37 RTWIWIPDSKESFVKAWIVEDLGEKY 62 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,963,049 Number of Sequences: 5004 Number of extensions: 62137 Number of successful extensions: 243 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 236 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 243 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -