Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d13
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    29   3.6  
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680...    29   3.6  
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924...    29   4.8  
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246...    28   6.3  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    28   6.3  

>09_04_0247 +
           16030543-16031324,16032812-16033088,16033374-16033559,
           16033714-16033866,16034277-16034702,16035922-16037668,
           16037687-16038183,16038519-16038709,16038786-16038941,
           16040077-16040311,16040416-16040723,16041279-16041439,
           16041852-16041895,16041975-16042067
          Length = 1751

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 458 LLGAVKRGTLPFSTVQIQRRR*HRNLPRPMELRHRSLA 571
           LL A    T P    + QRRR HR+ PRP      SL+
Sbjct: 13  LLPAAAAATFPLILRRRQRRRHHRHRPRPCPTLRASLS 50


>02_03_0172 +
           15965342-15965711,15967757-15967849,15967976-15968060,
           15968749-15968824,15968992-15969120,15969473-15969571,
           15969661-15969762,15970257-15970415,15970507-15970602,
           15971497-15971647,15971782-15971893,15972004-15972074,
           15972548-15972984,15973421-15973492,15973713-15973810,
           15974350-15974425,15975512-15975634,15975776-15975844
          Length = 805

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 496 NSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSL 618
           N ++++ + TP  STS+   TP  S  ++NTL L+ S+ ++
Sbjct: 609 NDSDAQTSGTPSRSTSHILKTPEKSCHNENTLPLIPSSEAI 649


>03_02_0531 -
           9240635-9240957,9241742-9241865,9241961-9242103,
           9242205-9242340,9242468-9242796,9243236-9243305
          Length = 374

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 264 GTKKEIQQRVRP*GHSHTEILQRNNL*REFRIGNI 368
           GTK      V P   S TEILQ +NL R+F  G +
Sbjct: 41  GTKASASSSVPPTPRSETEILQSSNL-RKFTFGEL 74


>04_04_0451 -
           25323178-25323241,25323614-25323741,25324533-25324634,
           25325314-25325382,25325489-25325557,25325646-25325720,
           25325805-25325909,25326394-25326492,25326626-25328344,
           25328629-25328931,25329031-25329129,25329733-25329850,
           25329933-25330018,25330091-25330159,25330232-25330306,
           25330675-25330772,25331271-25331432,25332391-25332556,
           25332902-25332970,25333064-25333126,25333221-25333376,
           25334027-25334365
          Length = 1410

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 511 EKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSSW 690
           E+ + P  S S+ + T      +   + + ++A   ++S     T+R +QS + G  S  
Sbjct: 520 ERVVQPSRSLSHASGTSALGYGTSAIVAMDKTAAISSDSSFSSNTLRLSQSKTVGRSSER 579

Query: 691 TLES 702
           +LES
Sbjct: 580 SLES 583


>03_02_0067 +
           5364713-5364936,5365513-5367016,5367207-5368250,
           5368467-5368577,5368997-5369068,5369719-5369737,
           5369838-5371142,5371317-5371397,5372441-5372604,
           5373363-5373466,5373537-5373628,5374079-5374216,
           5374370-5374426,5374820-5375046
          Length = 1713

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 523 TPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRAT-QSMSSGTLSSWTLE 699
           T +++   G     FSVSS ++   LES  +L  S  ++  IR +  SM  G  SS  +E
Sbjct: 590 TFRAAVGTGVAASSFSVSSLSSDKCLESLAALLSSQTLRDAIRTSINSMPEGQ-SSRCIE 648

Query: 700 SFT 708
             T
Sbjct: 649 ELT 651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,038
Number of Sequences: 37544
Number of extensions: 290979
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)