Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d13
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     31   1.2  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   3.7  
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)               28   6.5  
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    28   8.5  
SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +1

Query: 451 ISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESH 630
           +S  ++  +  S    SA+ +KTLT  +STS     P  S+++ +    L++  +LN S 
Sbjct: 225 VSKSFTEVSVSSNTTTSASVQKTLTTSASTSLAVAQPHTSLATSSNSQALKTE-TLNSSS 283

Query: 631 VMKPTIRATQSMSSGTLSS 687
              P +    + SS  ++S
Sbjct: 284 A-SPAVSTASASSSQLVAS 301


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
 Frame = +1

Query: 442 LSMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTP------FFSVSSKNTL--TL 597
           +SM S+P  S +  S+V  S+ S    TP ++T+   TTP       +SV  K  +   L
Sbjct: 55  ISMHSSPSISVSVASSVMPSSTSVAPTTPPATTTKAPTTPPKPTFGDYSVKDKQGMFCLL 114

Query: 598 LESAVSLNESHVMKPTIRATQSMSS 672
            + + + N +++ K     T+ MSS
Sbjct: 115 AQLSATFNVTYLKKKAGNKTEEMSS 139


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 484  SAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQS 663
            +    S+N E  +TPKSST      P  S SS  ++  ++S  S N + +       TQ 
Sbjct: 1766 TVALKSSNVEAKITPKSSTDAARLIPKASKSSTGSVN-VKSRSSTNATQITPKASTGTQK 1824

Query: 664  M 666
            +
Sbjct: 1825 V 1825


>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 CIETFLSTLQNYRWLINLADH 215
           C   +LS+L++Y WL +L DH
Sbjct: 279 CNHEWLSSLRDYEWLCSLRDH 299


>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 466 SSETWDSAV-FNSANSEKTLTPKSSTSYGATTPFFSVSSKNTL 591
           ++ T D AV F +   ++ L   ++ SYGA+T  FS+ + N++
Sbjct: 4   NTSTRDIAVDFQTKRQKRKLRAATAASYGASTTQFSIGTVNSM 46


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 481 DSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNES 627
           D+ ++N+A S        +TSY   TP+ S +S N  T    A S N +
Sbjct: 572 DATLYNNATS-----CNDATSYNNATPYNSATSYNNATSCNDATSYNNA 615


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 183 FVTSIKMFRYSCKYPFFIMDYQGIKCTYYL 94
           + TS + FR SC  P+F     G +CT  L
Sbjct: 470 YPTSRRSFRVSCVLPYFQAFLSGFRCTTVL 499


>SB_7210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 442 LSMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFF-SVSSKNTLTLLESAVSL 618
           L    +P+  ET++S   +S  S  T +  +STS  +  P   SV+S   ++  +S V +
Sbjct: 633 LPQCPSPYPKETYESTTTDSTKSATTYSSSNSTSLQSKGPVLDSVNSCTAVSADDSLVPI 692

Query: 619 N 621
           +
Sbjct: 693 S 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,232
Number of Sequences: 59808
Number of extensions: 373660
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)