Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d13
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26050.1 68416.m03244 expressed protein                             29   2.3  
At1g69220.2 68414.m07926 serine/threonine protein kinase, putati...    29   2.3  
At1g69220.1 68414.m07925 serine/threonine protein kinase, putati...    29   2.3  
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing...    28   7.0  

>At3g26050.1 68416.m03244 expressed protein
          Length = 533

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 532 SSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQSMSSGTLSS 687
           +STS     P  S  SK + + LES+V +   H +K T + + S S+ +LS+
Sbjct: 164 NSTSLSKERPPSSSGSKVSSSKLESSVVIELDHSLKNTKKESSSSSTRSLSA 215


>At1g69220.2 68414.m07926 serine/threonine protein kinase, putative
           identical to serine/threonine kinase [Arabidopsis
           thaliana] gi|2352084|gb|AAB68776
          Length = 809

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 484 SAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQS 663
           S V  S     TL PKSS   G T P  S   +N+ T      +LN  H+   T+ A + 
Sbjct: 506 SVVAPSLEDTSTLGPKSSEELGITVP--SKPPQNS-TEAPLTSTLNRQHITGNTVLAGEG 562

Query: 664 MSSGTL 681
              GT+
Sbjct: 563 GDFGTM 568


>At1g69220.1 68414.m07925 serine/threonine protein kinase, putative
           identical to serine/threonine kinase [Arabidopsis
           thaliana] gi|2352084|gb|AAB68776
          Length = 836

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +1

Query: 484 SAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLTLLESAVSLNESHVMKPTIRATQS 663
           S V  S     TL PKSS   G T P  S   +N+ T      +LN  H+   T+ A + 
Sbjct: 533 SVVAPSLEDTSTLGPKSSEELGITVP--SKPPQNS-TEAPLTSTLNRQHITGNTVLAGEG 589

Query: 664 MSSGTL 681
              GT+
Sbjct: 590 GDFGTM 595


>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
           protein similar to SP|O00623 Peroxisome assembly protein
           12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
           {Homo sapiens}; contains Pfam profile PF04757: Pex2 /
           Pex12 amino terminal region
          Length = 393

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 222 DSSGQLSL*AICSFVTSIKMFRYSCKYPFFIMDYQGIKCTYYLMYL 85
           + SG   L       T IK F   C YP+     +G+  TY L+YL
Sbjct: 171 EPSGNEELSVRVQLATKIKKFIAVC-YPWIHASSEGLSFTYQLLYL 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,217
Number of Sequences: 28952
Number of extensions: 251728
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)