Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d11
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 110 IYRVYNGKMSTETQNVQN 163
           I  VYNG ++ E +NVQ+
Sbjct: 44  IDEVYNGNVNVEDENVQS 61


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  ILIQCYFQNKILTNLFC 70
           ++I CY++  +L  LFC
Sbjct: 109 MVINCYYETWVLGPLFC 125


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  ILIQCYFQNKILTNLFC 70
           ++I CY++  +L  LFC
Sbjct: 75  MVINCYYETWVLGPLFC 91


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 58  KFILL*CLFEKLFYFVTNLQSLQWQN 135
           KFI L  L+E   YF  N + LQ  N
Sbjct: 155 KFIQLPPLYEMCPYFFFNSEVLQKAN 180


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 58  KFILL*CLFEKLFYFVTNLQSLQWQN 135
           KFI L  L+E   YF  N + LQ  N
Sbjct: 155 KFIQLPPLYEMCPYFFFNSEVLQKAN 180


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 452 PQFVKHFSSRTKYTGQHRNFDCKRSARATPE 360
           PQ  + F+  T   G      C  S   TPE
Sbjct: 394 PQIRQAFAEETLQPGPSMFLKCVASGNPTPE 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,973
Number of Sequences: 438
Number of extensions: 1907
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)