Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d08
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    28   1.1  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   3.4  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   7.8  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   7.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.8  

>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 352 SKPRYLGSWLPDRPGVTSPRC--WRRAPSS 435
           S P Y  SW+P    + S RC  W  +PSS
Sbjct: 282 SHPLYSSSWIPTLHDLVSTRCSVWLTSPSS 311


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 441 ASPEDVAWNIFRCGYNRKAVLFDYMPAGGASSGNTENHP*LLSS 572
           ++P+  AW       N  +    Y+ +G +  GNT NHP  +SS
Sbjct: 116 SNPQGYAWTPSLLSSNATS----YLHSGSSPHGNTSNHPSPISS 155


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 47  HSNQRPPQHRPHEH 6
           H + RPP H PH H
Sbjct: 170 HPHTRPPHHPPHPH 183


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 325 LQLSRTQYTCFLSAASSISSPFIMDSNSLGST 230
           L+LS+ +   FL   SSISSP   DS+S  ST
Sbjct: 58  LRLSKIK-DVFLMQGSSISSPDTYDSSSSSST 88


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 442 APGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFP 332
           A GC  HA   +   R      + P+I   SSFP  P
Sbjct: 539 AIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDP 575


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 457 WPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPSY-LVPIPTY 585
           WP    + +T   R     C P+A LAA    +P Y  VP P Y
Sbjct: 165 WPEDVQENSTLPERKLPKGCMPLAALAA--NCMPQYFFVPGPVY 206


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = -1

Query: 505  NSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGL---AASFPSIAALSSFPSF 335
            N+ +  + P  ++  +T+SGL    S   SST   S        +AS  S ++ S   S 
Sbjct: 973  NTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSN 1032

Query: 334  PIILQLSRTQYTCFLSAASSISSP 263
            P+   +S   Y    S  S + +P
Sbjct: 1033 PVKTVVSLESYKFTTSKISLVKNP 1056


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,455
Number of Sequences: 5004
Number of extensions: 44630
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)