Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d07
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           35   0.055
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    29   3.6  
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521     29   3.6  
02_04_0413 + 22681957-22682035,22682253-22682788                       28   8.3  

>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 68  GYCPPVCSPPDCRPICGPASPLLCQSSVPP 157
           G CPP C PP C   C P  PL C    PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 248
           +RSF    C+  N ++          ++L  CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869


>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
          Length = 136

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 89  SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
           S PDC   CG  SP  C + V  + +C    PC  +Y C
Sbjct: 89  SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 62  KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPCINIYSC 205
           K G C   CS  +C P   P SP  CQ   PPT  C +P  PC     C
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PCSESGCC 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,355,145
Number of Sequences: 37544
Number of extensions: 291930
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)