Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d04
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09540.1 68416.m01133 pectate lyase family protein simliar to... 36 0.017
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 31 0.48
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 31 0.48
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 31 0.48
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 31 0.48
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 31 0.63
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family... 31 0.63
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.83
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.83
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /... 31 0.83
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.1
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 1.9
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 1.9
At5g06350.1 68418.m00711 expressed protein 29 2.5
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 2.5
At5g52680.1 68418.m06540 heavy-metal-associated domain-containin... 29 3.4
At4g33660.1 68417.m04781 expressed protein 29 3.4
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 3.4
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 29 3.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 3.4
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 3.4
At5g35180.1 68418.m04169 expressed protein 28 4.4
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 28 4.4
At5g15510.1 68418.m01816 expressed protein 28 4.4
At4g18570.1 68417.m02749 proline-rich family protein common fami... 28 4.4
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 4.4
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 28 5.9
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 5.9
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 28 5.9
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 27 7.8
At5g22240.1 68418.m02589 ovate family protein 60% similar to ova... 27 7.8
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 27 7.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 27 7.8
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 7.8
At2g43150.1 68415.m05358 proline-rich extensin-like family prote... 27 7.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 7.8
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 27 7.8
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 27 7.8
>At3g09540.1 68416.m01133 pectate lyase family protein simliar to
style development-specific protein 9612 SP:P24396 from
[Lycopersicon esculentum]
Length = 378
Score = 36.3 bits (80), Expect = 0.017
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDA 260
PFP P P P PS +P V PYCH D+
Sbjct: 25 PFPPPYTAAPAPAPAPS-SPSDHHMTVGPYCHVDS 58
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 31.5 bits (68), Expect = 0.48
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Frame = +3
Query: 192 PPTPSGAPP---AQRAPVAPYCHCDAHSYSPRVE-QYKQLLEKEQ--KLCQDYEQLRKQM 353
P P+G PP AQ+ V + AH+ S Y E++ KL Y+ + +
Sbjct: 19 PDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNFKVDV 78
Query: 354 VSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQSSAPIPVESNRLGLL 533
VS+T ++ +D+ ++ +A + ++A + S V ++R+GL+
Sbjct: 79 VSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRMGLI 138
Query: 534 RCYKDPTHF 560
DP F
Sbjct: 139 PIAADPRLF 147
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 31.5 bits (68), Expect = 0.48
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Frame = +3
Query: 192 PPTPSGAPP---AQRAPVAPYCHCDAHSYSPRVE-QYKQLLEKEQ--KLCQDYEQLRKQM 353
P P+G PP AQ+ V + AH+ S Y E++ KL Y+ + +
Sbjct: 19 PDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNFKVDV 78
Query: 354 VSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQSSAPIPVESNRLGLL 533
VS+T ++ +D+ ++ +A + ++A + S V ++R+GL+
Sbjct: 79 VSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRMGLI 138
Query: 534 RCYKDPTHF 560
DP F
Sbjct: 139 PIAADPRLF 147
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 31.5 bits (68), Expect = 0.48
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Frame = +3
Query: 192 PPTPSGAPP---AQRAPVAPYCHCDAHSYSPRVE-QYKQLLEKEQ--KLCQDYEQLRKQM 353
P P+G PP AQ+ V + AH+ S Y E++ KL Y+ + +
Sbjct: 19 PDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNFKVDV 78
Query: 354 VSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQSSAPIPVESNRLGLL 533
VS+T ++ +D+ ++ +A + ++A + S V ++R+GL+
Sbjct: 79 VSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRMGLI 138
Query: 534 RCYKDPTHF 560
DP F
Sbjct: 139 PIAADPRLF 147
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 99 LRISIKMDFVTNTHNDYQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPR 278
L ++I + FV+ + +Y + P P V P PP +P P H + S P
Sbjct: 13 LVLTISLTFVSQSTANYFYSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPP 72
Query: 279 VEQY 290
V+ Y
Sbjct: 73 VKHY 76
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 135 THNDYQ---WPFPKPIVGKPCE---PPTPSGAPPAQRAPVAP 242
T+N+YQ P P P+ P + PPTP +PP P P
Sbjct: 32 TYNNYQPQHSPLPSPVYSSPADLPPPPTPVYSPPPADLPPPP 73
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
protein
Length = 558
Score = 31.1 bits (67), Expect = 0.63
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 183 PCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVEQYKQLLEKE---QKLCQDYEQLRKQM 353
P PPTP PP P P SP V Q QLL K+ + L Q + Q+
Sbjct: 255 PFAPPTPPPPPPPP--PPRPLAKAARAQKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQV 312
Query: 354 VSVTNDIL 377
S N I+
Sbjct: 313 NSAHNSIV 320
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.7 bits (66), Expect = 0.83
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Frame = +3
Query: 159 FPKPIVGKPCEPPTPSGAPPAQRAPVA-----PYCHCDAHSYSPRV---EQYKQLLEKEQ 314
FP P+ P P P PP R PV+ D+ S + E+ KQ+ E+++
Sbjct: 43 FPPPMAPIPMMPHPPVARPPTFRPPVSQNGGVKTSDSDSESDDEHIEISEESKQVRERQE 102
Query: 315 KLCQDYEQLRK--QMVSVTND 371
K QD R+ M TND
Sbjct: 103 KALQDLLVKRRAAAMAVPTND 123
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 159 FPKPIVGKPCEPPTPSGAPPAQRAPV 236
+ PI P +PPTP+ +PP Q PV
Sbjct: 466 YSPPIKPPPVKPPTPTYSPPVQPPPV 491
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 159 FPKPIVGKPCEPPTPSGAPPAQRAPV 236
+ PI P +PPTP+ +PP + PV
Sbjct: 516 YSPPIKPPPVKPPTPTYSPPIKPPPV 541
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 159 FPKPIVGKPCEPPTPSGAPPAQRAPV 236
+ PI P +PPTP +PP + PV
Sbjct: 332 YSPPIKPPPVKPPTPIYSPPVKPPPV 357
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 147 YQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVE 284
Y P P V KP PTP+ +PP + PV P +YSP V+
Sbjct: 449 YSPPVKPPPVHKP---PTPTYSPPIKPPPVKP----PTPTYSPPVQ 487
>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 491
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 132 NTHNDYQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
N HN + PKP +PPTP PP AP P
Sbjct: 39 NNHNHHSSK-PKPPSSSISQPPTPPPGPPDSPAPSLP 74
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 162 PKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVEQYKQ 296
P P + PP+PS PP + P +C + SP +Y+Q
Sbjct: 541 PPPYIYSSPPPPSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQ 585
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +3
Query: 168 PIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRV 281
PIV KPC PP P PP P P C Y P V
Sbjct: 370 PIVKKPCPPPVPIYKPPVV-IPKKP-CPPPVPVYKPPV 405
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 135 THNDYQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVEQYKQL 299
+ N P P P + P PP PS P + P P H + P Q+ QL
Sbjct: 16 SQNSLAPPPPPPSLPPPVPPPPPSHQPYSYPPPPPPPPHA-YYQQGPHYPQFNQL 69
>At5g06350.1 68418.m00711 expressed protein
Length = 890
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 279 VEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCDDLDSK 407
+E YK +++K +D +L+ + +++ + PCD+ D+K
Sbjct: 193 LENYKDIIQKNHFYVEDKSKLKVALSGLSHCLSVLPCDESDTK 235
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 138 HNDYQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
H+ + P P P P +PP + P + PV P
Sbjct: 56 HHPHPHPHPHPPAKSPVKPPVKAPVSPPAKPPVKP 90
>At5g52680.1 68418.m06540 heavy-metal-associated domain-containing
protein low similarity to pneumococcal surface protein A
PspA [Streptococcus pneumoniae] GI:7800654; contains
Pfam profile PF00403: Heavy-metal-associated domain
Length = 238
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 126 VTNTHNDYQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCH 251
+ N + P P P V P P P+ APP+ A VA Y +
Sbjct: 174 INNARKTSRVPAPVP-VRAPAPTPKPAPAPPSVPASVAAYAN 214
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 147 YQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
Y +P+P P P PP P G PP P P
Sbjct: 6 YAYPYPAP-GNYPQGPPPPVGVPPQYYPPPPP 36
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P P P PC PP P+ PP + P
Sbjct: 154 PPPTPTPEAPCPPPPPTPYPPPPKPETCP 182
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAPY 245
P P P+V P PPTP+ P P PY
Sbjct: 145 PPPPPVVTPP--PPTPTPEAPCPPPPPTPY 172
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 279 VEQYKQLLEKEQKLCQDYE--QLRKQMVSVTNDI--LDHPCDDLDSKMTTMYQATYKKRS 446
VEQYK E++QKL ++ E +LRK++V + D P K + + +
Sbjct: 399 VEQYKTERERQQKLAEEEEIRRLRKELVPKAQPMPYFDRP---FIPKRSNKHPTVPRDPK 455
Query: 447 FPVADYRTIMASSQSS 494
F + ++ I S SS
Sbjct: 456 FNIPQHKKIRCCSTSS 471
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSP 275
P P V P PP P +PPAQ AP D+ S SP
Sbjct: 102 PATPPPVATP--PPAPLASPPAQVPAPAPTTKPDSPSPSP 139
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSP 275
P P V P PP P +PPAQ AP D+ S SP
Sbjct: 102 PATPPPVATP--PPAPLASPPAQVPAPAPTTKPDSPSPSP 139
>At5g35180.1 68418.m04169 expressed protein
Length = 778
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 225 RAPVAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDI 374
R ++ + D + PRV +Y L+K ++ Q E L +Q ++ ND+
Sbjct: 179 RTKLSMEANIDLEGHRPRVRRYAYGLKKLIRIGQGPESLLRQSSTLVNDV 228
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 162 PKPIVGKPCEPPTPSGAPPAQRAPVAPY 245
P P V +P PPT + +PP R A Y
Sbjct: 162 PPPTVTRPPPPPTITRSPPPPRPQAAAY 189
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = +3
Query: 279 VEQYKQLLEKEQKLCQDYE--QLRKQMV 356
+EQYK E++QKL ++ E +LRK++V
Sbjct: 409 IEQYKMERERQQKLAEEEEIRRLRKELV 436
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P P P++ +P PP+ S APP P P
Sbjct: 315 PPPPPLLQQPPPPPSVSKAPPPPPPPPPP 343
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P P P V P PPTP+ + P+ PV+P
Sbjct: 91 PSPTPPVSPP--PPTPTPSVPSPTPPVSP 117
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P P P V P PPTP+ + P+ PV+P
Sbjct: 109 PSPTPPVSPP--PPTPTPSVPSPTPPVSP 135
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P P P V P PPTP+ + P+ PV+P
Sbjct: 127 PSPTPPVSPP--PPTPTPSVPSPTPPVSP 153
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 549 PTHFSENPPKVRPSIHPPAP 608
P+H S PP P HPP P
Sbjct: 28 PSHISPPPPPFSPPHHPPPP 47
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 162 PKPIVGKPCEPPTPSGAPPAQRAPVAPYCH 251
P P P PP P +PP Q P +PY H
Sbjct: 34 PPPPFSPPHHPPPPHFSPPHQ-PPPSPYPH 62
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +3
Query: 156 PFPKPIVGKPCEPP--TPSGAPPAQRAPVAPYCH 251
P P P+ P PP +P +PP P P H
Sbjct: 419 PLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIH 452
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 165 KPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVEQYKQ 296
+P P P P PP +AP H ++ P+ QY Q
Sbjct: 284 EPYCPPPSHPQPPPSNPPPYQAPQTQTPHQPSYQSPPQQPQYPQ 327
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAP 242
P PKP P PTP+ PP + AP
Sbjct: 86 PKPKPAPTPPNPKPTPAPTPPKPKPAPAP 114
>At5g22240.1 68418.m02589 ovate family protein 60% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 196
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 360 VTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQSSAPIPVESNRLGLLRC 539
V+ +L PC +D + A K+ P DY+ M I ES LLRC
Sbjct: 82 VSPTVLRSPCPKIDESV-----AMAKESINPFEDYKKSMNQMIEERYIETESELKELLRC 136
Query: 540 YKD 548
+ D
Sbjct: 137 FLD 139
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 210 APPAQRAPVAPYCHCDAHSYSPR 278
APP + P+ YC DA YS R
Sbjct: 142 APPGSQIPLLTYCDEDADMYSDR 164
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 156 PFPKPIVGKPCEPPTPSGAPPAQRAPVAPYC 248
P P P+ P P S PP AP YC
Sbjct: 504 PPPPPVYSPPPPPVYSSPPPPPSPAPTPVYC 534
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 279 VEQYKQLLEKEQKLCQDYEQLRKQMVSVTN 368
++QY+ + EKE+++ Q++E RK+ V +
Sbjct: 1046 LDQYEAIQEKEKQVSQEFEAARKEEKQVAD 1075
>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
similar to CRANTZ hydroxyproline-rich glycoprotein
[Manihot esculenta] gi|7211797|gb|AAF40442; similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 212
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 147 YQWPFPKPIVGKPCEPPTPSGAPPAQRAPVAPYCHCDAHSYSPRVE 284
Y + P P V P P S PP ++P PY + HS P V+
Sbjct: 72 YYYHSPPPPVKSPPPPYVYSSPPPPVKSPPPPYYY---HSPPPPVK 114
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 156 PFPK--PIVGKPCEPPTPSGAPPAQRAPVAP 242
P PK P++ PP P +PPA V+P
Sbjct: 83 PAPKVAPVISPATPPPQPPQSPPASAPTVSP 113
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 162 PKPIVGKPCEPPTPSGAPPAQRAP 233
PKPIV P +PP PS + + P
Sbjct: 56 PKPIVSAPYKPPPPSNSSQSVLIP 79
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = +3
Query: 156 PFPKPIVGKPCEP----PTPSGAPPAQRAPVAP 242
P PKP+ C P P P APP + P P
Sbjct: 58 PQPKPVPPPACPPTPPKPQPKPAPPPEPKPAPP 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,134
Number of Sequences: 28952
Number of extensions: 252394
Number of successful extensions: 1609
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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