Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d03
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 29 3.5
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 6.1
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 6.1
04_04_0597 + 26502819-26502853,26503030-26503171,26503929-265041... 28 6.1
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 28 6.1
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 28 6.1
01_06_1137 - 34801750-34801955,34802586-34802856,34802961-348031... 28 6.1
08_01_0895 - 8806113-8806220,8806642-8806712,8806969-8807155,880... 28 8.1
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 8.1
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 195 FRTCVNIECPSVEPLEICDDDPGAC 269
+ C NI C SV P E CD D C
Sbjct: 161 YERCKNISCQSVLPAEECDCDVCCC 185
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = +3
Query: 243 ICDDDPGACVVKSGGPFV-----KTFNSGKSCLFSLKEADINKAMSKFPIKVTVYK-SLP 404
+C D CVVK+ P + K ++ +C L + + MS P +++ + S
Sbjct: 892 VCSKD--TCVVKASDPLIPMDKIKNDSTDGACESPLILVNNDNEMSTKPEVLSIPRASKT 949
Query: 405 CGCLPTKIVMGEATIDMTKEFVQARKKFLEDPSNVS 512
CG I ++ D+ E VQ +K +E N+S
Sbjct: 950 CGSDFQDIAPTSSSEDLPPEEVQYEQKVVESDGNIS 985
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -3
Query: 370 NLDIALFISASFREKRHDLPLLNVLTKGPPLLTTQ-APGSSSHISRGSTDGHSIFTHVLK 194
NL+ ++ +R +++ +P+ + P + +T + G+++ RG HS+ T +L+
Sbjct: 469 NLENIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSVMTFLLE 528
Query: 193 SLSEKQGLFANTILSTNTSRRKSPSS 116
+ +F SR K P S
Sbjct: 529 YETINDIIFDTEYGKDYESRNKKPKS 554
>04_04_0597 +
26502819-26502853,26503030-26503171,26503929-26504186,
26504276-26504407,26504834-26504980
Length = 237
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 220 HSIFTHVLKSLSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKNRILYLYYFVI 50
H + THVL+ + Q L+ + +TN R + AI + L L++FV+
Sbjct: 170 HLMSTHVLQQAQQIQYLYDQAVEATNNVERGNKELSQAI-QRNSSSRTFLLLFFFVL 225
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -3
Query: 370 NLDIALFISASFREKRHDLPLLNVLTKGPPLLTTQ-APGSSSHISRGSTDGHSIFTHVLK 194
NL+ ++ +R +++ +P+ + P + +T + G+++ RG HS+ T +L+
Sbjct: 52 NLENIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSVMTFLLE 111
Query: 193 SLSEKQGLFANTILSTNTSRRKSPSS 116
+ +F SR K P S
Sbjct: 112 YETINDIIFDTEYGKDYESRNKKPKS 137
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -3
Query: 370 NLDIALFISASFREKRHDLPLLNVLTKGPPLLTTQ-APGSSSHISRGSTDGHSIFTHVLK 194
NL+ ++ +R +++ +P+ + P + +T + G+++ RG HS+ T +L+
Sbjct: 611 NLENIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSVMTFLLE 670
Query: 193 SLSEKQGLFANTILSTNTSRRKSPSS 116
+ +F SR K P S
Sbjct: 671 YETINDIIFDTEYGKDYESRNKKPKS 696
>01_06_1137 -
34801750-34801955,34802586-34802856,34802961-34803153,
34803754-34803834,34803914-34804039,34804119-34804269,
34804346-34804490,34805088-34805279
Length = 454
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = -2
Query: 515 VADITGVFQKLFPCLYKFFCHVYCCFSHYYLCW*TTARKRFIHCYFYRKLGHSFIYISLF 336
+ +I G +F C + S+ +C+ I FY K S I +S++
Sbjct: 88 IIEIVGASDIIFALSQSGVCAAFSRVSNQRICFLNGRPDEVIRSLFYNKNNDSLITVSVY 147
Query: 335 *GEKT*FAAIECFNKR 288
E F+A+ C R
Sbjct: 148 GSEN--FSALRCRTTR 161
>08_01_0895 -
8806113-8806220,8806642-8806712,8806969-8807155,
8807473-8807603,8807679-8807811,8808124-8808242,
8808751-8809039,8809150-8809272,8809300-8809323,
8810016-8810072,8810148-8810255
Length = 449
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -2
Query: 413 TTARKRFIHCYF-YRKLGHS 357
+T + F+HCYF Y +LGH+
Sbjct: 430 STKKDSFVHCYFVYLRLGHA 449
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 494 RPQ*CQLRSIKRCFSHCRVRWC 559
RP C+L ++ RCF H R R C
Sbjct: 162 RPLRCRLHALWRCFFHWRSRCC 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,616
Number of Sequences: 37544
Number of extensions: 396357
Number of successful extensions: 1063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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