Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d03
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    33   0.26 
AC024826-1|AAY86307.1|  221|Caenorhabditis elegans Egr (early gr...    28   7.3  
Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.      27   9.6  
AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    27   9.6  

>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +3

Query: 273 VKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGCLPTKIVMGEATID 452
           +K+   + +T +  K   +S KE   N  +    ++     S+    LP+K   G+  ID
Sbjct: 63  LKASVTYTQTLSLVKYNNYSQKETVKNSEVVYSSLQKVYTSSIALSELPSKASNGDKIID 122

Query: 453 MTKEFVQARKKFLEDPSNVS--YEALKDAFRIVGS 551
           M   F ++ K   ED  ++   YE LK     V S
Sbjct: 123 MLNSFEKSIKSLTEDSPSIGTLYELLKSRHLRVSS 157


>AC024826-1|AAY86307.1|  221|Caenorhabditis elegans Egr (early
           growth factor responsefactor) homolog protein 2 protein.
          Length = 221

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = -3

Query: 424 FVGKQPQGRDLYTVTFIGNLDIALFISASFREKRHDLPL--LNVLTKGPPLLTTQAPGSS 251
           F G  PQ  +      +GN+   + I+ +  +K  +L L  + + + GP  L   +PG S
Sbjct: 12  FFGFPPQTAETKLKDLLGNISFGVPINGNNEQKSEELKLKDIEISSTGPSGL--DSPGLS 69

Query: 250 SHISRGSTDGHSIFTHVLKSLSEKQGL 170
           + + + S     +  H+L++L+ K G+
Sbjct: 70  AAMFQFS----PMVEHLLQNLTNKAGV 92


>Z92786-7|CAB07209.1|  145|Caenorhabditis elegans Hypothetical
           protein F47H4.10 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 178 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 80
           +GLF  T  S  N+ + KSP    A+FN GN  N
Sbjct: 110 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 143


>Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical
           protein R07E5.5 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 342 ADINKAMSKFPIKVTVYKSLPC 407
           AD+ KA+S +  K T+YK L C
Sbjct: 53  ADVEKALSVYKEKDTIYKCLQC 74


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 180 FSDKDFRTCVNIECPSVEPLEICDDDPGACV 272
           F D D  TC++  CP   P   CD+ PG CV
Sbjct: 17  FCDAD--TCIDKFCP---PGTFCDERPGPCV 42


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 477 RKKFLEDPSNVSYEALKDAFRIVGSDGVEAGEIIMFLRI 593
           +  F+  PS   YE L +   +   +  E  EII FLRI
Sbjct: 241 KNSFISPPSMPEYEQLPNFQNVQPFNASETSEIIRFLRI 279


>AF440508-1|AAL34096.1|  144|Caenorhabditis elegans SKR-5 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 178 QGLFANTILS-TNTSRRKSPSSCLAIFNYGNGKN 80
           +GLF  T  S  N+ + KSP    A+FN GN  N
Sbjct: 109 KGLFNVTCKSIANSIKGKSPEEIRAVFNLGNETN 142


>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 236 RLDRWTLNIHTCSKIFVRKTRAFCEYNF 153
           RLDR  L+I+ C+    + +R F  Y F
Sbjct: 89  RLDRMFLHIYLCTSFIEKHSRRFLAYGF 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,978,840
Number of Sequences: 27780
Number of extensions: 387599
Number of successful extensions: 1120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)