Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d03
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62420.1 68414.m07042 expressed protein contains Pfam profile... 31 0.96
At3g54650.1 68416.m06046 F-box family protein (FBL17) contains s... 30 1.7
At4g01915.3 68417.m00254 expressed protein 29 2.2
At3g60570.1 68416.m06776 beta-expansin, putative (EXPB5) conatin... 29 2.2
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 2.9
At4g01915.2 68417.m00253 expressed protein 29 3.9
At4g01915.1 68417.m00252 expressed protein 29 3.9
At2g22840.1 68415.m02712 expressed protein identical to transcri... 29 3.9
At1g60410.1 68414.m06801 F-box family protein contains F-box dom... 29 3.9
At3g60700.1 68416.m06791 expressed protein 27 8.9
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 27 8.9
At1g36745.1 68414.m04571 hypothetical protein 27 8.9
At1g16930.1 68414.m02053 F-box family protein contains F-box dom... 27 8.9
>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 465
Score = 30.7 bits (66), Expect = 0.96
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 464 FFCHVYCCFSHYYLCW*TTARKRFIH 387
F C + C++ Y++ W T+ R++ IH
Sbjct: 353 FLCDCFSCYTSYWVRWDTSPRRQLIH 378
>At3g54650.1 68416.m06046 F-box family protein (FBL17) contains
similarity to F-box protein FBL2 GI:6010699 from [Rattus
norvegicus]
Length = 593
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 183 SDKDFRT--CVNIECPSVEPLEICDDDPGACVVKSGGPFVKTFNSGKSCLFSLK 338
SD D T C+ CP++E LEI GA V + G + F + K L SLK
Sbjct: 208 SDFDATTLACIAFSCPNLEVLEITTS--GAAVNRISGDELSRFVANKRGLTSLK 259
>At4g01915.3 68417.m00254 expressed protein
Length = 106
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 238 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIFNYGNGKNRILYLY 62
RGS+ S THVL SL K LF + + + T+ SR SCLA F + +L+
Sbjct: 16 RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYFTV-----QFFHLW 65
Query: 61 YFV 53
Y++
Sbjct: 66 YYI 68
>At3g60570.1 68416.m06776 beta-expansin, putative (EXPB5) conatins
similarity to beta-expansin GI:8118428 from [Oryza
sativa]; beta-expansin gene family, PMID:11641069
Length = 252
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 258 PGACVVKSGGPFVKTFNSGKSCLFSLKEADINKAMSKFPIKVTVYKSLPCGC 413
P C+V +GGP F GK C + + +K PIKV + P GC
Sbjct: 65 PYRCMVSAGGP--SLFKDGKGCGACYRLKCDHPLCTKKPIKVMISDECP-GC 113
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -3
Query: 325 RHDLPLLNVLTKGPPLLTTQAPGSSSHISRGSTDGHSIFTHVLKSLSEKQGLFA 164
R + ++N+ K PGSS++I+ GS D H I + L+++S+ +F+
Sbjct: 494 RQEASVINIDMKANICCVKYNPGSSNYIAVGSAD-HHIHYYDLRNISQPLHVFS 546
>At4g01915.2 68417.m00253 expressed protein
Length = 73
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 238 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIF 101
RGS+ S THVL SL K LF + + + T+ SR SCLA F
Sbjct: 16 RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYF 57
>At4g01915.1 68417.m00252 expressed protein
Length = 73
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 238 RGSTDGHSIFTHVLKSLSEKQGLFANTI-LSTNTSRRKSPSSCLAIF 101
RGS+ S THVL SL K LF + + + T+ SR SCLA F
Sbjct: 16 RGSSSRWSPLTHVLISLFTKTELFKSVLFIQTSGSR-----SCLAYF 57
>At2g22840.1 68415.m02712 expressed protein identical to
transcription activator GRL1 [Arabidopsis thaliana]
GI:21539880 (unpublished); supporting cDNA
gi|21539879|gb|AY102634.1|
Length = 530
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 253 SSHISRGSTDGHSIFTHVLKSLSEKQGLFANTILSTNTSRRKSPSSCLAIFNYGNGKNRI 74
SS +SR STDG S K+LS QG+ + ST + + + F+ +GK+ +
Sbjct: 42 SSKLSRTSTDGFSSSPASAKTLSFHQGI--PLLRSTTINDPRKGQEHMLSFSSASGKSDV 99
Query: 73 L-YLYY 59
YL Y
Sbjct: 100 SPYLQY 105
>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
Pfam:PF00646
Length = 406
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 207 VNIECPSVEPLEICDDDPGACVVKSGGPFVK 299
V I+ PS+E + ICD P + + GPF +
Sbjct: 229 VEIDSPSLEFMSICDKKPESLKIHRIGPFAE 259
>At3g60700.1 68416.m06791 expressed protein
Length = 219
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 452 VYCCFSHYYLCW*TTARKRFIHCYFYRK 369
++CCFS + W T +F YF K
Sbjct: 29 IFCCFSQLLVVWVTLCAVKFSCSYFLSK 56
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 408 GCLPTKIVMGEATIDMTKEFVQARKKFLEDPSNVSYEALKDAFRIVGSD 554
GC+ + AT+D+ K FL+ N S + +AF+I+ SD
Sbjct: 294 GCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSD 342
>At1g36745.1 68414.m04571 hypothetical protein
Length = 110
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 564 AGEIIMFLRISCFGKLIITRFQGAGPPNLSSA 659
AG ++M+LR+ FG+ I R+ +L SA
Sbjct: 64 AGVVLMYLRVKHFGRFIAVRWLAEKAMDLESA 95
>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 207 VNIECPSVEPLEICDDDPGACVVKSGGPFVK 299
V I+ P +E + +CD + ++ + GPF K
Sbjct: 230 VTIDAPRLEYMNLCDHRSDSFIIHNIGPFAK 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,774,292
Number of Sequences: 28952
Number of extensions: 347168
Number of successful extensions: 1043
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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