Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d02
(646 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to tRNA-dihyd... 273 2e-72
UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep: CG14... 252 7e-66
UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=... 235 9e-61
UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9; Magnoliop... 221 1e-56
UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1; ... 193 4e-48
UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Re... 186 4e-46
UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2; ... 185 9e-46
UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to tRNA-dihyd... 183 4e-45
UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;... 171 9e-42
UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of str... 168 9e-41
UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3; ... 164 2e-39
UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2; ... 164 2e-39
UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;... 161 1e-38
UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of s... 160 2e-38
UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7; Sa... 157 3e-37
UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1; ... 155 9e-37
UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12... 153 5e-36
UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1; ... 144 2e-33
UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1; ... 144 2e-33
UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1; ... 139 6e-32
UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1; ... 120 4e-26
UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory p... 110 2e-23
UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1; ... 106 5e-22
UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putativ... 103 4e-21
UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, wh... 101 1e-20
UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein; ... 99 1e-19
UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=... 99 1e-19
UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep: ... 97 2e-19
UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;... 96 6e-19
UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep: N... 96 7e-19
UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1; ... 95 2e-18
UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1; ... 93 5e-18
UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;... 93 5e-18
UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11; S... 92 1e-17
UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;... 91 2e-17
UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;... 90 5e-17
UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1; ... 89 8e-17
UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein ECU07_... 87 5e-16
UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1; ... 85 1e-15
UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:... 83 4e-15
UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;... 83 6e-15
UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative... 83 7e-15
UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17; P... 80 4e-14
UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep: Lm... 80 5e-14
UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2; Cy... 80 5e-14
UniRef50_Q7RX85 Cluster: Putative uncharacterized protein NCU000... 79 1e-13
UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;... 78 2e-13
UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=... 78 2e-13
UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3; Bacter... 77 3e-13
UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5; Firm... 77 4e-13
UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10; S... 76 6e-13
UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1; Desu... 76 8e-13
UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel prot... 76 8e-13
UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1... 76 8e-13
UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel prot... 75 1e-12
UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2; Culi... 75 1e-12
UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=... 75 1e-12
UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829 p... 75 1e-12
UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putativ... 75 1e-12
UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain protein-... 74 3e-12
UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2; ... 74 3e-12
UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2; ... 73 5e-12
UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;... 73 5e-12
UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase; ... 73 5e-12
UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 fami... 73 6e-12
UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1; ... 73 6e-12
UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protei... 73 6e-12
UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,... 73 8e-12
UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine... 72 1e-11
UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1; Paraba... 72 1e-11
UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4; Prot... 72 1e-11
UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3; Mo... 71 2e-11
UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR - Lepto... 71 2e-11
UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus lu... 71 2e-11
UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Nov... 71 2e-11
UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1; ... 70 6e-11
UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly d... 70 6e-11
UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6; S... 69 1e-10
UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;... 69 1e-10
UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=2... 69 1e-10
UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;... 68 2e-10
UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella ve... 68 2e-10
UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;... 67 4e-10
UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1; ... 67 4e-10
UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lambl... 67 4e-10
UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6; Ga... 67 4e-10
UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779... 66 5e-10
UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 fami... 66 7e-10
UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2; ... 66 7e-10
UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel prot... 66 9e-10
UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultu... 66 9e-10
UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly d... 66 9e-10
UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3 fam... 65 1e-09
UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1; Petr... 65 2e-09
UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1; ... 65 2e-09
UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase; ... 65 2e-09
UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protei... 64 2e-09
UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n... 64 4e-09
UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2; Proteob... 64 4e-09
UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep: CG1049... 64 4e-09
UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1; ... 64 4e-09
UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;... 63 5e-09
UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 63 5e-09
UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 fami... 63 5e-09
UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214; ... 63 5e-09
UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to dihydrouri... 63 6e-09
UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24... 63 6e-09
UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter ... 63 6e-09
UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 fami... 63 6e-09
UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus lu... 63 6e-09
UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4; Legio... 62 8e-09
UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1; Ostr... 62 8e-09
UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine syn... 62 8e-09
UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781 p... 62 1e-08
UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1; Thiomicro... 61 2e-08
UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1; ... 61 2e-08
UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI; ... 61 3e-08
UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;... 61 3e-08
UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4; Therm... 61 3e-08
UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase; ... 61 3e-08
UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 61 3e-08
UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1; ... 61 3e-08
UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA... 60 3e-08
UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1; Dicheloba... 60 3e-08
UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2; ... 60 3e-08
UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3; ... 60 3e-08
UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22; Alph... 60 4e-08
UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8; P... 60 4e-08
UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep... 60 4e-08
UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 60 4e-08
UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1... 60 4e-08
UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: Ni... 60 6e-08
UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15... 60 6e-08
UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6; Sa... 60 6e-08
UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 60 6e-08
UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel prot... 59 8e-08
UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel prot... 59 8e-08
UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 fami... 59 8e-08
UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;... 59 1e-07
UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel prot... 58 1e-07
UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel prot... 58 1e-07
UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putativ... 58 1e-07
UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1; ... 58 1e-07
UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10; ... 58 2e-07
UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein Y37E11... 58 2e-07
UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1; Marin... 58 2e-07
UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase; ... 58 2e-07
UniRef50_UPI0000499494 Cluster: conserved hypothetical protein; ... 57 3e-07
UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7; Chlamydi... 57 3e-07
UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Ther... 57 3e-07
UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1; ... 57 3e-07
UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5; Al... 57 4e-07
UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3; ... 56 6e-07
UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4; Lept... 56 7e-07
UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lambli... 56 1e-06
UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231; ... 56 1e-06
UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase; ... 55 1e-06
UniRef50_UPI0000DAE45A Cluster: hypothetical protein Rgryl_01000... 55 2e-06
UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;... 55 2e-06
UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 fami... 55 2e-06
UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel prot... 55 2e-06
UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;... 54 2e-06
UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel prot... 54 2e-06
UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putativ... 54 2e-06
UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel prot... 54 3e-06
UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2; ... 53 5e-06
UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21; C... 53 5e-06
UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;... 53 5e-06
UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1; Sacc... 53 7e-06
UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia lam... 53 7e-06
UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1; ... 52 9e-06
UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 52 9e-06
UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4; Bifid... 52 1e-05
UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4; B... 52 1e-05
UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;... 52 1e-05
UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;... 52 1e-05
UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4; Ne... 52 1e-05
UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;... 52 2e-05
UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1; T... 52 2e-05
UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1; ... 51 2e-05
UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2; ... 51 3e-05
UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase; ... 51 3e-05
UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1; P... 50 5e-05
UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aede... 50 5e-05
UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;... 50 6e-05
UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN f... 50 6e-05
UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2; Beta... 50 6e-05
UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase; ... 50 6e-05
UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1; C... 50 6e-05
UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5; Bacteri... 49 8e-05
UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase; ... 49 8e-05
UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domai... 49 8e-05
UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;... 49 1e-04
UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1; Ca... 49 1e-04
UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, wh... 49 1e-04
UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2; Sinor... 48 3e-04
UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5; ... 48 3e-04
UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whol... 47 3e-04
UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1; Chro... 47 3e-04
UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4; M... 47 3e-04
UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1; Poly... 47 3e-04
UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3; ... 47 4e-04
UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO249... 46 6e-04
UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2; ... 46 6e-04
UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30; ... 46 8e-04
UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26; P... 46 8e-04
UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8; Pr... 46 0.001
UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1; ... 45 0.001
UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,... 45 0.001
UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1; ... 45 0.002
UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3; Prot... 45 0.002
UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative... 45 0.002
UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8; Pr... 45 0.002
UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep: CG1046... 44 0.002
UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2; Gammapr... 44 0.003
UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2; un... 44 0.003
UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2; Prot... 44 0.003
UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;... 44 0.004
UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel prot... 43 0.006
UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3; Alte... 43 0.006
UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2; Endopterygota|... 43 0.006
UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2; ... 43 0.006
UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2; ... 43 0.007
UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225... 42 0.010
UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1; Desu... 42 0.010
UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia... 42 0.010
UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase; ... 42 0.017
UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118; ... 42 0.017
UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7; B... 41 0.029
UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1; Bu... 40 0.051
UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2; Meth... 39 0.090
UniRef50_A7RQK6 Cluster: Predicted protein; n=1; Nematostella ve... 39 0.090
UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1; ... 39 0.090
UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase; ... 39 0.090
UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1; ... 39 0.12
UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2... 38 0.16
UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 fami... 38 0.21
UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.21
UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3; ... 38 0.27
UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7; Desu... 37 0.36
UniRef50_Q47741 Cluster: Dihydroorotate dehydrogenase B, catalyt... 37 0.36
UniRef50_Q1F0W8 Cluster: Dihydroorotate dehydrogenase 1; n=1; Cl... 37 0.48
UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2; ... 37 0.48
UniRef50_A6PMB8 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 37 0.48
UniRef50_Q00XL7 Cluster: TRNA-dihydrouridine synthase; n=1; Ostr... 37 0.48
UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase, put... 36 0.84
UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1; ... 36 0.84
UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1; Di... 36 0.84
UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme... 36 1.1
UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4; Desu... 36 1.1
UniRef50_Q8G660 Cluster: Dihydroorotate dehydrogenase; n=4; Bifi... 35 1.5
UniRef50_O75864 Cluster: R32611_1; n=20; Euteleostomi|Rep: R3261... 35 1.5
UniRef50_Q7SGX4 Cluster: Putative uncharacterized protein NCU031... 35 1.5
UniRef50_A4RL93 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_P07670 Cluster: Dihydroorotate dehydrogenase; n=3; Dict... 35 1.5
UniRef50_A0LD69 Cluster: Dihydroorotate dehydrogenase family pro... 35 1.9
UniRef50_A1RZC9 Cluster: Dihydroorotate dehydrogenase family pro... 35 1.9
UniRef50_Q979G6 Cluster: Dihydroorotate dehydrogenase; n=4; Ther... 35 1.9
UniRef50_UPI0000F1F64B Cluster: PREDICTED: hypothetical protein;... 34 2.6
UniRef50_Q6D9Y3 Cluster: Enterobactin synthetase component F; n=... 34 3.4
UniRef50_Q73RG6 Cluster: Dihydrouridine synthase, putative; n=1;... 33 5.9
UniRef50_Q39PB0 Cluster: Dihydroorotate dehydrogenase 1; n=81; B... 33 5.9
UniRef50_Q23WS6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_Q2NEH7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.9
UniRef50_A3J321 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_Q8IJJ6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
>UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Nasonia vitripennis
Length = 505
Score = 273 bits (670), Expect = 2e-72
Identities = 131/180 (72%), Positives = 151/180 (83%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+ Y +K+I+APMVRIGTLPMRLLAL+YGADIVYTEELIDWK LRS RR N++L TVDY+D
Sbjct: 53 LTYADKLIMAPMVRIGTLPMRLLALEYGADIVYTEELIDWKLLRSVRRVNEVLGTVDYID 112
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+TDGTIVFRT E+ +VVLQLGTCD RALKVAKLVE DVA ID+NMGCPK FSI GGM
Sbjct: 113 RTDGTIVFRTSPIERDRVVLQLGTCDANRALKVAKLVEQDVAGIDVNMGCPKRFSILGGM 172
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
G ALL +P+KA +IL+TLV LSIPVTCKIR+L E TL+LV+ LV +GI AI VHGRT
Sbjct: 173 GAALLKQPEKASEILRTLVGGLSIPVTCKIRVLGNVEDTLKLVDTLVDTGISAITVHGRT 232
>UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep:
CG1434-PA - Drosophila melanogaster (Fruit fly)
Length = 473
Score = 252 bits (616), Expect = 7e-66
Identities = 120/198 (60%), Positives = 150/198 (75%)
Frame = +2
Query: 53 RFKTFIT*SILLQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFL 232
R T + S ++ ++Y NK+ILAPMVR+GTLPMRLLAL+ GADIVYTEEL+D K +
Sbjct: 3 RLPTILRKSFSMKTRQRLDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLI 62
Query: 233 RSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA 412
+S RR N L TVD+VD +DGTIVFRTC +E ++VLQ+GT D RAL V KL++ D++
Sbjct: 63 KSIRRPNPALGTVDFVDPSDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISG 122
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELV 592
+DINMGCPKEFSIKGGMG ALL+ PDKA IL+TL L IPVTCKIRIL E T++LV
Sbjct: 123 LDINMGCPKEFSIKGGMGAALLADPDKAAHILRTLCSGLDIPVTCKIRILPDVEGTIDLV 182
Query: 593 NKLVSSGIKAIAVHGRTK 646
KL ++GI AI +H RT+
Sbjct: 183 QKLAATGIAAIGIHARTR 200
>UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=27;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 2-like -
Homo sapiens (Human)
Length = 493
Score = 235 bits (574), Expect = 9e-61
Identities = 115/183 (62%), Positives = 141/183 (77%)
Frame = +2
Query: 98 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 277
+++ Y NK+ILAPMVR+GTLPMRLLAL YGADIVY EELID K ++ KR N++L+TVD+
Sbjct: 6 LSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDF 65
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 457
V D +VFRTCE E+ +VV Q+GT D RAL VA+LVE+DVA ID+NMGCPK++S KG
Sbjct: 66 V-APDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKG 124
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHG 637
GMG ALLS PDK +IL TLV PVTCKIRIL + E TL LV ++ +GI AIAVHG
Sbjct: 125 GMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHG 184
Query: 638 RTK 646
R +
Sbjct: 185 RKR 187
>UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9;
Magnoliophyta|Rep: OSIGBa0125M19.5 protein - Oryza
sativa (Rice)
Length = 319
Score = 221 bits (540), Expect = 1e-56
Identities = 104/179 (58%), Positives = 134/179 (74%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
M Y +K++LAPMVR+GTLP RLLA +YGADI Y EE+ID KFL+ +R N+ L T D+++
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ T+VFRTC +E+ +VV Q+GT D RALK A+LV +DVAAIDINMGCPK FS+ GGM
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM 120
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
G ALLSKP+ + IL TL NL VTCKIR+L T + T+EL ++ G+ A+AVHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGR 179
>UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 402
Score = 193 bits (470), Expect = 4e-48
Identities = 96/180 (53%), Positives = 131/180 (72%), Gaps = 1/180 (0%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
M+Y NK I+APMVR+GT PMR+LA YG DI Y+EELID K ++S R N+ L T+D++
Sbjct: 28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIA 87
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ D T+ +RT E++ + V LQLGT AL+ AK+V +D+ A+DINMGCPK FS++GGM
Sbjct: 88 K-DQTLCYRTSEKDVRNV-LQLGTASSMTALEAAKVVCNDICALDINMGCPKFFSVQGGM 145
Query: 464 GVALLSKPDKAYQILKTLVDNLS-IPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
G ALLSKP+ IL TL NL+ IP+TCKIR+L T + T++L+ + S+G+ AI VH R
Sbjct: 146 GSALLSKPETIKDILTTLKRNLNGIPITCKIRLLSTDQETIDLLRIIESTGVSAIGVHCR 205
>UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 345
Score = 186 bits (453), Expect = 4e-46
Identities = 96/179 (53%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
Y K + APMVRI TL RLLA +YGAD+VY EEL+D +F+ +R N L +VD++D
Sbjct: 11 YTGKNVCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKELGSVDFID-A 69
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
GT+ FRT EE+++VV Q+GT A ALK A+LV DVAAID+NMGCPK FS GGMG
Sbjct: 70 KGTLTFRTVPEERERVVFQVGTSSAASALKSAELVARDVAAIDVNMGCPKHFSTSGGMGA 129
Query: 470 ALLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
LLS+P+ IL TL NL + VTCKIR+L++ T EL + S G+ A AVHGR
Sbjct: 130 RLLSQPELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMIESCGVSAFAVHGR 188
>UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 436
Score = 185 bits (450), Expect = 9e-46
Identities = 90/179 (50%), Positives = 120/179 (67%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
Y NK ILAPMVR G P+RLL LKYGAD+ YTEE++D K + + R N+ L T+DY +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
D I+ R EEK + +LQ+GT +A K+A++V DVA ID+NMGCPK FSI GMG
Sbjct: 65 D--IILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGA 122
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
ALL++ +K IL +L +PVTCKIR+L PE TL+LV ++ + A+ VHGR +
Sbjct: 123 ALLTQTEKIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRR 181
>UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Strongylocentrotus
purpuratus
Length = 499
Score = 183 bits (445), Expect = 4e-45
Identities = 84/134 (62%), Positives = 106/134 (79%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++Y NK+ILAPMVRIGTLP RLLAL+YGADIVY +ELID+K L +R N +L TVDY+
Sbjct: 36 LSYANKVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLGTVDYIS 95
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ D ++FRTC +E ++V Q+GT D RAL+VAK+VE DV+ IDINMGCPK+FS+KGGM
Sbjct: 96 KDD-VVIFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGM 154
Query: 464 GVALLSKPDKAYQI 505
G ALL KPD +I
Sbjct: 155 GAALLQKPDTIKEI 168
>UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus2 - Schizosaccharomyces pombe (Fission
yeast)
Length = 479
Score = 171 bits (417), Expect = 9e-42
Identities = 85/187 (45%), Positives = 121/187 (64%), Gaps = 7/187 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS---KRRFNDILNTVD 274
+NY NK+ LAPMVRIG LPMRLLAL+YGA++V+ E++D L +R ND +N +D
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 275 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 454
+V ++FR E +++ QLG+ A++ AKLV +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKLVSSGIKA 622
GMG LL D+ IL LV+ + P ++CKIR+L+T E TL+LV ++ +G++A
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRA 183
Query: 623 IAVHGRT 643
I VH RT
Sbjct: 184 ITVHCRT 190
>UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 394
Score = 168 bits (409), Expect = 9e-41
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 11/191 (5%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++Y K++LAPMVR G P RLL++KYGAD+V++ E++D K L R +N+ TVD+
Sbjct: 2 VSYAGKLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFTV 61
Query: 284 QTDG-------TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKE 442
G I+FRT E E+ K++ Q+G+ + A+ K+V DVA ID+N GCPK
Sbjct: 62 SQQGKGNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAKDVAGIDLNCGCPKH 121
Query: 443 FSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKLVSS 610
FS+ GMG ALL PDK IL+ LV + P ++ KIR+L+T E TLELV++L +
Sbjct: 122 FSMHAGMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLAQT 181
Query: 611 GIKAIAVHGRT 643
G+K + +H RT
Sbjct: 182 GVKNLTIHCRT 192
>UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 496
Score = 164 bits (398), Expect = 2e-39
Identities = 77/181 (42%), Positives = 123/181 (67%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+NY+NK++LAPMVR G+LPMRLL+L YGA +V++ E++D + ++R + + + Y
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITY-H 162
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ G I F T EK ++ Q+G+ + A+K A+ V+ DVA ID+N GCPK FS GM
Sbjct: 163 KGQGPI-FSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQDVAGIDLNCGCPKPFSTHAGM 221
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
G ALLS P+ IL+ L+D++ +P++CKIR+L T +TL L ++++ +G++ + VH RT
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIRLLPTQPSTLYLASRILRTGVRNLTVHCRT 281
Query: 644 K 646
+
Sbjct: 282 R 282
>UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 513
Score = 164 bits (398), Expect = 2e-39
Identities = 94/216 (43%), Positives = 130/216 (60%), Gaps = 19/216 (8%)
Frame = +2
Query: 53 RFKTFIT*SILLQFPI---NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDW 223
R +FI SI + PI ++Y KI+LAPMVR G LP RLLAL YGAD+V+ E +D
Sbjct: 82 RLTSFIMTSIPKKVPIPRKGVDYRGKIVLAPMVRSGELPSRLLALHYGADLVWGPETVDR 141
Query: 224 KFLRSKRRFNDILNTVDYVD-----------QTDGTIVFRTCEE-EKKKVVLQLGTCDEA 367
+ + R+ N LNT+D+ + +++FR E E KK++ Q+GT D
Sbjct: 142 SMIGTTRKVNTALNTIDFTRLPSQGHKEKNANLNESLIFRLHPELEGKKLIFQIGTSDPE 201
Query: 368 RALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL----SI 535
+A++ A++V DVA ID+N GCPK FS GGMG ALL PDK IL+ LV + I
Sbjct: 202 KAVQCARMVAADVAGIDVNAGCPKPFSTSGGMGAALLQTPDKLCAILEALVKEIVPEFEI 261
Query: 536 PVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
++ KIR+L+TPE T LV KL ++GI + +H RT
Sbjct: 262 GISVKIRLLETPERTEALVRKLCATGITGLTIHCRT 297
>UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 433
Score = 161 bits (391), Expect = 1e-38
Identities = 83/189 (43%), Positives = 118/189 (62%), Gaps = 9/189 (4%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV- 280
+ Y NK+ LAPMVR G LP+RLL+L+YG D+++T EL+D K L+S R N LNT+DY+
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 281 ---DQTD-GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 448
Q+D T++FR E +++LQLG+ D A+ A+ V DV ID+N GCPK FS
Sbjct: 62 SNHQQSDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFS 121
Query: 449 IKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKLVSSGI 616
GMG LL PDK IL LV+ + IP ++CKIR+ + + L+ K++ +GI
Sbjct: 122 THSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGI 181
Query: 617 KAIAVHGRT 643
+ +H RT
Sbjct: 182 SNLTIHCRT 190
>UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome B of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 374
Score = 160 bits (389), Expect = 2e-38
Identities = 84/187 (44%), Positives = 120/187 (64%), Gaps = 7/187 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+ Y K+ LAPMVR G +P RL+AL+YGAD+V+T E++D K ++ +R ND L TVD++D
Sbjct: 2 VEYSGKLALAPMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLD 61
Query: 284 QTDGTIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
+VFRT EE K++ Q+G+ D A++ AK+V DV ID+N GCPK FS G
Sbjct: 62 PNK-KVVFRTYPAEELGKLIFQIGSADPELAVQAAKIVAQDVDGIDLNCGCPKPFSTHSG 120
Query: 461 MGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEAT--LELVNKLVSSGIKA 622
MG ALL+ PD IL+ LV + IP++ KIR+L + T LEL+++L +GI
Sbjct: 121 MGAALLTTPDLLELILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRLCKTGISN 180
Query: 623 IAVHGRT 643
+ +H RT
Sbjct: 181 LTLHCRT 187
>UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 384
Score = 157 bits (380), Expect = 3e-37
Identities = 90/189 (47%), Positives = 121/189 (64%), Gaps = 10/189 (5%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+ Y K++LAPMVR G LP RL+AL +GAD+V++ E+ID K ++ R+ N L TVDYV
Sbjct: 2 VTYAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVV 61
Query: 284 ----QT-DGTIVFRTCEE-EKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 445
QT T+VFRT + E K++ Q+G+ A A + A V +DV+ IDIN GCPK F
Sbjct: 62 PSKVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHF 121
Query: 446 SIKGGMGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEATLELVNKLVSSG 613
SI GMG ALL PD ILK LV N+ S P++ KIR+L T + TL+LV +L ++G
Sbjct: 122 SIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATG 181
Query: 614 IKAIAVHGR 640
I + VH R
Sbjct: 182 ITNLTVHCR 190
>UniRef50_A5DYF6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 504
Score = 155 bits (376), Expect = 9e-37
Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 14/194 (7%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV- 280
+ Y NK+ LAPMVR G LP+RLLAL+YG D+V++ E ID K ++++RR N LNT+DY+
Sbjct: 7 LTYTNKVCLAPMVRSGELPIRLLALRYGCDLVWSPEYIDRKIIQTQRRVNAELNTIDYII 66
Query: 281 ---------DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGC 433
+VFR EE K++ QLGT A++ A V DV ID+N GC
Sbjct: 67 PNNKDPSKMKHNQDNVVFRKHPEETGKLIFQLGTSTPELAVEAALRVIEDVDGIDLNCGC 126
Query: 434 PKEFSIKGGMGVALLSKPDKAYQILKTLVDNL----SIPVTCKIRILKTPEATLELVNKL 601
PK FS GGMG LL PD IL+ LV+ + P++CKIR+L EA+ L+ ++
Sbjct: 127 PKSFSTHGGMGAELLKTPDILCSILRALVEKVGNPNKKPISCKIRLLPNFEASKLLIEQI 186
Query: 602 VSSGIKAIAVHGRT 643
+GI+ + +H RT
Sbjct: 187 CQTGIRNLTIHCRT 200
>UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12;
Pezizomycotina|Rep: Contig An02c0390, complete genome -
Aspergillus niger
Length = 446
Score = 153 bits (370), Expect = 5e-36
Identities = 88/199 (44%), Positives = 117/199 (58%), Gaps = 16/199 (8%)
Frame = +2
Query: 95 PIN-MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 271
P N ++Y K++LAPMVR G LP RL+ALKYGAD+V+ E ID + RR N T+
Sbjct: 13 PANGVDYRGKVVLAPMVRSGELPSRLIALKYGADLVWGPETIDRAMAGAIRRVNPRNGTI 72
Query: 272 DYVDQTDG----------TIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAID 418
++ ++++R EK K++ Q+GT A++ AKLV DVA ID
Sbjct: 73 EFTRMPSNGGRTEKAGQESVIYRLDPVREKGKLIYQIGTATPEIAVQAAKLVAGDVAGID 132
Query: 419 INMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLE 586
+N GCPK FS GGMG ALL PDK IL+ LV + P ++ KIRILK PE T
Sbjct: 133 VNSGCPKPFSTSGGMGAALLKTPDKLVAILEALVKEVGTPFQIGISVKIRILKDPEETRA 192
Query: 587 LVNKLVSSGIKAIAVHGRT 643
LV++LV +GI + VH RT
Sbjct: 193 LVSRLVKTGITGLTVHCRT 211
>UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 766
Score = 144 bits (348), Expect = 2e-33
Identities = 82/186 (44%), Positives = 111/186 (59%), Gaps = 5/186 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+ Y N I LAPMVRIGTLP RLL+L+YGAD+V+ E++D + +R+ N V+Y+
Sbjct: 72 LEYRNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVNPHTGVVEYL- 130
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 457
D +F E+ +V QLG+ D A + K + DVAA+D+N GCPK FS
Sbjct: 131 -KDHKQIFSCHPIERPYLVYQLGSADPHLAFQAIKTITQADDVAAVDLNCGCPKPFSTHA 189
Query: 458 GMGVALLSKPDKAYQILKTL--VDNLSIPVTCKIRILKTPEATLELVNKLVSSG-IKAIA 628
GMG +LS P LK + + VTCKIR+L T E TLELV+K+V +G I+ +
Sbjct: 190 GMGANMLSTPILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEKTLELVDKIVRTGAIECLT 249
Query: 629 VHGRTK 646
VH RTK
Sbjct: 250 VHCRTK 255
>UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 453
Score = 144 bits (348), Expect = 2e-33
Identities = 78/195 (40%), Positives = 118/195 (60%), Gaps = 15/195 (7%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY-- 277
++Y KI+LAPMVR G P R+++LKYGAD+V+ E +D + +KRR N + ++Y
Sbjct: 18 VDYRGKIVLAPMVRSGETPSRIVSLKYGADLVWGPETVDRAIIGAKRRINPRNSMIEYTR 77
Query: 278 VDQTDG--------TIVFRTCE-EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMG 430
+ G ++++R E+ K++ QLGT + + A++ AK+V DV+ ID+N G
Sbjct: 78 IPSNGGQPNKPAQESVLYRIDPVRERGKLIFQLGTANPSLAVEAAKVVAADVSGIDVNSG 137
Query: 431 CPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNK 598
CPK FS GGMG ALL PD+ IL+ LV+ + P ++ KIR+L PE T LV +
Sbjct: 138 CPKPFSTSGGMGAALLQTPDRLVSILEALVEEIGKPYEIGISVKIRLLAEPERTEALVTR 197
Query: 599 LVSSGIKAIAVHGRT 643
+ +GI + VH RT
Sbjct: 198 VCRTGITGLTVHCRT 212
>UniRef50_A6R3V4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 461
Score = 139 bits (336), Expect = 6e-32
Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 16/196 (8%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
MN++ +LAPMVR G LP RLLALKYGAD+V+ E ID + RR N + V++
Sbjct: 1 MNHQR--VLAPMVRSGELPSRLLALKYGADLVWGPETIDRALIGCTRRINPRNSMVEFTR 58
Query: 284 -QTDG----------TIVFRTC-EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINM 427
++G +I++R E K+V Q+GT A++ AK++ DVA ID+N
Sbjct: 59 LPSNGGRENNQAAKESIIYRLDPHRESGKLVFQIGTASPDLAVQAAKIIAADVAGIDVNA 118
Query: 428 GCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVN 595
GCPK FS GGMG ALL PD+ IL LV + P ++ KIR+L PE T +LV
Sbjct: 119 GCPKPFSTTGGMGAALLQTPDRLVSILTALVQQVGTPYQIGISVKIRLLADPERTRDLVT 178
Query: 596 KLVSSGIKAIAVHGRT 643
+L ++GI + VH RT
Sbjct: 179 RLCATGITGLTVHCRT 194
>UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 313
Score = 120 bits (288), Expect = 4e-26
Identities = 64/177 (36%), Positives = 101/177 (57%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
Y+NK+I APMVR +L RL L+YGAD+V++ L+D + S +D ++ V+
Sbjct: 9 YKNKLIAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDDNNISLIKVENG 68
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
+F T EE+ K+++QL T D A+K A + + IDIN GCP+ F+ G G
Sbjct: 69 HNRRIFHTTAEERGKLIIQLITVDGPNAIKAADMCTEFASGIDINCGCPESFACHRGGGS 128
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
+ + + A ++KTL N +P++ K+R+ T E +L+ +V +G AI VHGR
Sbjct: 129 KM--QLESAVDVVKTLKMNSPLPISVKMRVKDTVEESLQFAKAMVDAGAVAITVHGR 183
>UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory
protein-3 homologue; n=3; Entamoeba histolytica|Rep:
Putative nitrogen fixation regulatory protein-3
homologue - Entamoeba histolytica
Length = 165
Score = 110 bits (265), Expect = 2e-23
Identities = 64/157 (40%), Positives = 92/157 (58%)
Frame = +2
Query: 170 LALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQL 349
+AL GA V+TEEL+ + KR N + Y+ + D + + E++ K +LQL
Sbjct: 1 MALDAGASAVFTEELVSKRLCECKRVENS--GIIQYIHKNDVMLTLKP--EQQSKTILQL 56
Query: 350 GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL 529
GT D ++K L++ +V IDIN+GC FS KG MG AL+ DK +I+K LV L
Sbjct: 57 GTFDVESSVKCVSLIQ-EVCGIDINLGCGMWFSTKGEMGQALVDNRDKLEKIVKALV-GL 114
Query: 530 SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
S P++ KIR+ +T E TLE + L S GI I++HGR
Sbjct: 115 SKPISAKIRLQQTHEETLEFIQWLYSLGISIISLHGR 151
>UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 333
Score = 106 bits (254), Expect = 5e-22
Identities = 61/179 (34%), Positives = 95/179 (53%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
Y KI PMVR LP RL+ L+ GAD VY L S N+ T+ +
Sbjct: 9 YRGKIFAGPMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPK 68
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
+ + F T +EK K++ Q+ T D ++A++ A +V AID+N GCP+ F+ G G
Sbjct: 69 NPHVHFHTDPKEKGKLIFQILTNDASKAVQAASVVVKFADAIDLNCGCPESFATSRGTGS 128
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+L+S+P+ ++ L N ++P++ K RI E +++ ++G AIAVHGR K
Sbjct: 129 SLMSEPEIVADVVSALRRNYNVPISVKHRIHHNIEESIQFAVACENAGASAIAVHGRLK 187
>UniRef50_Q38BB4 Cluster: TRNA-dihydrouridine synthase 2, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 2,
putative - Trypanosoma brucei
Length = 435
Score = 103 bits (247), Expect = 4e-21
Identities = 71/210 (33%), Positives = 106/210 (50%), Gaps = 32/210 (15%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFN----------DI 259
+ K ILAPMVR+GT+ R+ GADIV++EE++ K +R KR +
Sbjct: 4 FNGKTILAPMVRVGTVGFRVFCAAQGADIVFSEEVVASKLIRCKREVRTYTGCPCSMVEF 63
Query: 260 LNTVDYVDQTDGTIVFRT-----CEE--EKKKVVLQLGTCDEARALKVAKLVEHDVAAID 418
++ Y ++ +I F T C E VVLQLG + A + A L DV ID
Sbjct: 64 VSYEPYKNKFKRSIAFATVARGGCNSQGEGAPVVLQLGVAEPAIGARAALLCVDDVDGID 123
Query: 419 INMGCPKEFSIKGGMGVALLSKPDKAYQIL-----------KTLVDNLSIPVTCKIRILK 565
+NMGCPK+FS+ GMG AL+ P +A IL K + +P++ K R+L
Sbjct: 124 VNMGCPKKFSVDNGMGAALMRDPARAAAILVAVDEAVNSPEKVVARRRRVPISFKTRLLD 183
Query: 566 TPEATLELVNKLVS----SGIKAIAVHGRT 643
T +AT +++ ++ + AI +H RT
Sbjct: 184 TADATAQMLLSVMEGVGPDRVHAITLHART 213
>UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=4; Intramacronucleata|Rep:
Chromosome undetermined scaffold_94, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 101 bits (242), Expect = 1e-20
Identities = 64/176 (36%), Positives = 89/176 (50%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K I APMV L R+L KYG + YT L SK Y D+
Sbjct: 19 KFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESK----------SYKDE---- 64
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F TC E++ + QL D +K A +++ AIDIN+GCP+ + KG G LL
Sbjct: 65 -FFTTCPEDRP-LFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYLL 122
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
K ++ I+K L N+++PVTCKIR+ K + TL+L + +G + VHGRTK
Sbjct: 123 EKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTK 178
>UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 339
Score = 98.7 bits (235), Expect = 1e-19
Identities = 56/173 (32%), Positives = 92/173 (53%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
ILAPMV L R+L ++G ++ YT ++ F+ SK N+++N++D +Q
Sbjct: 25 ILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPKEQP----- 79
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
+++Q+ D + AK ++ AIDIN+GCP++ + KG G L
Sbjct: 80 ----------IIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALD 129
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
D +I+ +++ ++IPV CK+R+ + E T+ V L GI IAVHGRT
Sbjct: 130 FDHTKEIVNAVIEAVNIPVYCKVRVFEDEEKTMRFVEMLQECGIWGIAVHGRT 182
>UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=2;
Cryptosporidium|Rep: Dus1p, tRNA dihydrouridine synthase
- Cryptosporidium parvum Iowa II
Length = 409
Score = 98.7 bits (235), Expect = 1e-19
Identities = 65/178 (36%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K +LAPMV L RL+ KYG D+ Y S + + + + +T+
Sbjct: 20 KTVLAPMVDGSELAFRLICKKYGCDLGY-----------SPMYHSGLFSKLQGYRETN-- 66
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F+TCEE+ +V G D +K +K ++ V IDIN GCP+ + +G G LL
Sbjct: 67 --FQTCEEDDPMIVQFCGN-DPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLL 123
Query: 479 SKPDKAYQILKTLVD-NLSIPVTCKIRIL--KTPEATLELVNKLVSSGIKAIAVHGRT 643
S PD +I+ TL + +L PV+CKIRIL + T+ L+ +L S+G IAVHGRT
Sbjct: 124 SNPDLMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRT 181
>UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep:
Gb|AAF51525.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 423
Score = 97.5 bits (232), Expect = 2e-19
Identities = 65/176 (36%), Positives = 88/176 (50%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K I+APMV LP RLL KYGA YT L R F + T Y +Q
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPML-------HSRIFTE---TEKYRNQE--- 135
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F TC+E++ V Q D L+ AK VE +DIN+GCP+ + +G G L+
Sbjct: 136 --FTTCKEDRPLFV-QFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++ L NL++PV+CKIRI E TL+ L +G +AVHGRT+
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTR 248
>UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 339
Score = 96.3 bits (229), Expect = 6e-19
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
I PMVR LP R L Y DIVYT ++ +F+R N++ + D+
Sbjct: 29 IAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVR-----NEVARSTDF--------- 74
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
T + K V++Q+G + +K +++ V I IN GCP + ++ G+G AL+S
Sbjct: 75 --TTNDSDKCVIVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSD 132
Query: 485 PDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
PD +++KT D SI + KIRI + T++ VNK+V +G + VHGRTK
Sbjct: 133 PDLVAELIKTAKDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTK 188
>UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep:
NifR3-like protein - Methanosarcina mazei
(Methanosarcina frisia)
Length = 323
Score = 95.9 bits (228), Expect = 7e-19
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEEL-IDWKFLRSKRRFNDILNTVDYVDQTDGT 298
++LAPM + L RLL +YGAD+ YTE + +D S++ F L++ + D+ G
Sbjct: 17 LLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEE--DRPFGV 74
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+ C ++ K+ L + +E E+ ID+NMGCP G G ALL
Sbjct: 75 QLVGGCPDKLKRAALFI---EE----------EYRPEIIDVNMGCPARCITGAGCGSALL 121
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
+ P+ Y I+ L ++L PV+ KIR+L E TLE+ + +G A+ VHGRT
Sbjct: 122 NSPELVYSIILELTESLDTPVSAKIRLLGREEKTLEIARLIEKAGASAVTVHGRT 176
>UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 435
Score = 94.7 bits (225), Expect = 2e-18
Identities = 61/186 (32%), Positives = 93/186 (50%)
Frame = +2
Query: 89 QFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 268
+F N+ K +APMV L R+L KYGAD+VYT F K D
Sbjct: 43 EFFRNVLKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRD---- 98
Query: 269 VDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 448
+ TC E++ VV G + +K AK +E AID+N+GCP++ +
Sbjct: 99 -----------YWSTCPEDRPLVVQFCGN-EPEWVVKAAKYIEDHCDAIDLNLGCPQQIA 146
Query: 449 IKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIA 628
+G G LL KP I++ L ++ +P+ CKIR+L + T++L +L +G + +
Sbjct: 147 RRGNYGSFLLDKPHIILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLT 206
Query: 629 VHGRTK 646
+HGRTK
Sbjct: 207 IHGRTK 212
>UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 344
Score = 93.1 bits (221), Expect = 5e-18
Identities = 56/173 (32%), Positives = 90/173 (52%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
I APMVR LP R+L K+G DI YT ++ +F RS+ D T++ +D+
Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAA-RDSDFTINKLDEP----- 111
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
+++Q G + + A+ V+ IDIN GCP+ + +K G G LL
Sbjct: 112 ----------LIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLH 161
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
P++ Y ++K + + + IP++ KIR+ + T+EL + G+ I VHGRT
Sbjct: 162 PERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRT 214
>UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 326
Score = 93.1 bits (221), Expect = 5e-18
Identities = 66/187 (35%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
Frame = +2
Query: 92 FPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 271
F IN I APMVR LP R L Y DIVYT ++ +FL K R+ D
Sbjct: 12 FEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFD----- 66
Query: 272 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 451
F T + + ++LQ G D K A+LV V I IN GCP+ ++I
Sbjct: 67 -----------FSTNDADAS-LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAI 114
Query: 452 KGGMGVALLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKLVSSGIKAI 625
+ G+G ALL +P+K +++++ + L S KIRI K T L+ + SG I
Sbjct: 115 QEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADII 174
Query: 626 AVHGRTK 646
VHGRT+
Sbjct: 175 TVHGRTR 181
>UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 423
Score = 91.9 bits (218), Expect = 1e-17
Identities = 60/174 (34%), Positives = 90/174 (51%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
I+APMV L R+L+ +YGA + YT L F SK+ D +++D G+ V
Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLD------GSSV 85
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
R +V+Q D L AKLVE A+D+N+GCP+ + KG G L+ +
Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D + ++ TL NL +PVT KIRI E +L ++ +G + + VHGR +
Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVR 192
>UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;
n=5; Plasmodium|Rep: tRNA-dihydrouridine synthase,
putative - Plasmodium vivax
Length = 340
Score = 91.1 bits (216), Expect = 2e-17
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 1/177 (0%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K ILAPMV + L RLL Y + +T L F+ ++
Sbjct: 27 KHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKS-------------- 72
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F++CE++ + V+ Q + L + ++++V A+D+N+GCP++ + KG G LL
Sbjct: 73 -YFQSCEKD-EPVIAQFCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLL 130
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIR-ILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
K D+ ++ + +N +IP+TCKIR I + + TL L L S +K I VHGRTK
Sbjct: 131 QKHDEVVNLVSDITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTK 187
>UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 399
Score = 89.8 bits (213), Expect = 5e-17
Identities = 61/176 (34%), Positives = 86/176 (48%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K ILAPMV LP R+LA + GAD+ Y+ F S+ N + +T
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST---------- 68
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
RT EE+ ++ G D LK AK+ A+D+N+GCP+ + KG G L
Sbjct: 69 ---RTIPEERPLIIQFCGN-DPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQ 124
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ I+ L LSIPVT KIRI P+ TL+ ++ +G +AVHGR +
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLR 180
>UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 671
Score = 89.0 bits (211), Expect = 8e-17
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+N+EN++ILAP+ +G LP R + + GADI E + K L + +L
Sbjct: 320 INFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKR----- 374
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 457
CE+ K V G+ +A A+K A+ +E+++ A +DIN GCP +
Sbjct: 375 --------HPCED--KFGVQICGSYVDA-AVKCAEFIENEIDADFVDINSGCPIDLVCNM 423
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATL--ELVNKLVSSGIKAIAV 631
G G AL+ +P K Q+L+ + +LS P T KIRI K+ +A +L+ L G A+ +
Sbjct: 424 GAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTL 483
Query: 632 HGRTK 646
HGR++
Sbjct: 484 HGRSR 488
>UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein
ECU07_1610; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1610 - Encephalitozoon
cuniculi
Length = 341
Score = 86.6 bits (205), Expect = 5e-16
Identities = 57/173 (32%), Positives = 86/173 (49%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
+APMV R L+ ++GA+I YTE + FLR R N + N + D +V
Sbjct: 15 VAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSR--NPVKNRWYTTSEGDRPLVV 72
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
+ C G E L+ A +++ AID+N GCP++ + KGG G L
Sbjct: 73 QIC-----------GNSPEVM-LEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENW 120
Query: 488 DKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+I+K L L++PV CKIR+ + E T+E + +G +AVHGRT+
Sbjct: 121 KLTGEIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTR 173
>UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 527
Score = 85.0 bits (201), Expect = 1e-15
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEEL-----IDWKFLRSKRRFNDILNTVDYVDQT 289
++APMV L R+L+ +YG+D+VYT + D + K ++ ++ ++ ++
Sbjct: 52 VVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKKVKYQEVNFNREHAEEG 111
Query: 290 DGTIVFRTCEEE--------KKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 445
+ + E + + +Q + D LK AK+VE A+D+N+GCP+
Sbjct: 112 ASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVEDRCDAVDLNLGCPQHI 171
Query: 446 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAI 625
+ +G G L+ + ++ L NL +PVT K+R+ ++ E T+ L +G + I
Sbjct: 172 ARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMRVYESVEKTITYARLLERAGAQII 231
Query: 626 AVHGRTK 646
VHGRT+
Sbjct: 232 TVHGRTR 238
>UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:
CG3645-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 505
Score = 83.4 bits (197), Expect = 4e-15
Identities = 53/176 (30%), Positives = 87/176 (49%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
+ ++APMV L R+L +YGA++ Y+ F + D L
Sbjct: 29 RYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDAL------------ 76
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+TC E++ ++ G D + L A L + A+DIN+GCP+ + +G G L
Sbjct: 77 ---QTCPEDRPLIIQFCGN-DAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQ 132
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ + +I+ TL L++PVTCKIRI + E T+ L ++G + + VHGRT+
Sbjct: 133 DEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTR 188
>UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;
Babesia bovis|Rep: Dihydrouridine synthase, putative -
Babesia bovis
Length = 355
Score = 83.0 bits (196), Expect = 6e-15
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
+ + APMV LP RLL +Y D+ YT L F+ +++
Sbjct: 13 RYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKY---------------RA 57
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+ F+T +++ + ++ Q+ D + A+L++ V+A+D+N+GCP+ + G G LL
Sbjct: 58 VHFQTSDDD-RPLIAQVCGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLL 116
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRIL--KTPEATLELVNKLVSSGIKAIAVHGR 640
+PD I+ + + I VTCKIR + + ++TL L L SG KA+ VHGR
Sbjct: 117 DEPDLVTGIVSRVTREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGR 172
>UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative;
n=2; Trypanosoma cruzi|Rep: Dihydrouridine synthase
(Dus), putative - Trypanosoma cruzi
Length = 548
Score = 82.6 bits (195), Expect = 7e-15
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
++ PMV LP R+L +YGA + Y+ L F +S + +T + + T
Sbjct: 99 VVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAELAMTAT 158
Query: 305 F-----------RTCEEEKKKVVLQLGTC--DEARALKVAKLVEHDVAAIDINMGCPKEF 445
RT + E+ L + C D L A+ VE D A+D+N+GCP+
Sbjct: 159 ASGEGEAAEDAGRTSDGEETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGI 218
Query: 446 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAI 625
+ +G G L+ D+ + IL L L +PVT K+R+ TL+ L +GI +
Sbjct: 219 ARRGHYGSFLMEDWDRVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGIAVL 278
Query: 626 AVHGRTK 646
VHGRT+
Sbjct: 279 CVHGRTR 285
>UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17;
Pasteurellaceae|Rep: tRNA-dihydrouridine synthase B -
Pasteurella multocida
Length = 332
Score = 80.2 bits (189), Expect = 4e-14
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
+N+I LAPM I P R + YGA + ++E +++T V T+
Sbjct: 9 KNRIFLAPMAGITDQPFRRICTHYGAGLTFSE----------------MMSTNPQVWHTE 52
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGV 469
+ + +E +Q+ CD K A++ VE+ IDINMGCP + + G
Sbjct: 53 KSKLRLAHHQEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGS 112
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRT 643
ALL PD QIL +V ++++PVT KIR K LE+ GI+A+ +HGRT
Sbjct: 113 ALLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRT 172
Query: 644 K 646
+
Sbjct: 173 R 173
>UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep:
Lmo0227 protein - Listeria monocytogenes
Length = 331
Score = 79.8 bits (188), Expect = 5e-14
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ +N++++APM I RL ++GA +V E + D + D+L Y+
Sbjct: 6 NVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAKTLDML----YI 61
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 454
D E++K + LQ+ ++ ++ AK V + A IDINMGCP IK
Sbjct: 62 D------------EKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIK 109
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVS--SGIKAIA 628
G L P+K Y ++ +VD + PVT K+RI E + N L + +G A+A
Sbjct: 110 CEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAAERAGAAAVA 169
Query: 629 VHGRTK 646
+HGRT+
Sbjct: 170 MHGRTR 175
>UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA-dihydrouridine synthase B -
Stigmatella aurantiaca DW4/3-1
Length = 369
Score = 79.8 bits (188), Expect = 5e-14
Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 3/180 (1%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N ILAPM + P R++A K+GA + TE + +R+ +R T+ Y+
Sbjct: 43 NPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQR------TLKYL----- 91
Query: 296 TIVFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
R E ++ LQ+ G EA A H IDINMGCP + K G G A
Sbjct: 92 ----RFSPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSA 147
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEAT--LELVNKLVSSGIKAIAVHGRTK 646
L+ +P +A +I++ + + +PVTCKIR L++ +L S+G A+A+H RT+
Sbjct: 148 LMCEPLRAARIVQAIAEATGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTR 207
>UniRef50_Q7RX85 Cluster: Putative uncharacterized protein
NCU00065.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU00065.1 - Neurospora crassa
Length = 629
Score = 78.6 bits (185), Expect = 1e-13
Identities = 45/125 (36%), Positives = 65/125 (52%)
Frame = +2
Query: 272 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 451
DYV DG F + + +Q D A L AKLV A+D+N+GCP+ +
Sbjct: 122 DYVPFLDGNPEF------DRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAK 175
Query: 452 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAV 631
+G G L + ++++ TL L IPVT KIRIL T EATL+ ++ +G + V
Sbjct: 176 RGQYGSFLQENQELIFELINTLHKELDIPVTAKIRILDTKEATLKYAQNVLRAGASILTV 235
Query: 632 HGRTK 646
HGR +
Sbjct: 236 HGRRR 240
>UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;
Chlorobiaceae|Rep: TIM-barrel protein, nifR3 family -
Chlorobium tepidum
Length = 352
Score = 77.8 bits (183), Expect = 2e-13
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ + IILAPM + R L ++GADIVYTE F+ ++ + ++ +
Sbjct: 11 IDIDRPIILAPMEDVTDRAFRQLCKQHGADIVYTE------FISAEALRRGVEKSIRKIT 64
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
D E+ V G E+ A ++ +DIN GCP + G
Sbjct: 65 VAD---------HERPVAVQIFGNTVESMVEAAAIAETYEPDYLDINFGCPVKKVAGRGA 115
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHG 637
G ALL +P+K +I +V+ +S+PVT K RI ++ + V +L +GI+A+AVHG
Sbjct: 116 GAALLKEPEKLSEIASAVVNAVSLPVTAKTRIGWDHDSINITDTVRRLEDAGIRAVAVHG 175
Query: 638 RTK 646
RT+
Sbjct: 176 RTR 178
>UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=20;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 1-like -
Homo sapiens (Human)
Length = 473
Score = 77.8 bits (183), Expect = 2e-13
Identities = 51/174 (29%), Positives = 86/174 (49%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
++APMV L RLL+ ++GA + YT L F+R +Y + +
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRD----------ANYRKE---NLY 66
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
C E+ + +++Q D ++ A L + AID+N+GCP+ + +G G L +
Sbjct: 67 CEVCPED-RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D +++ + LS+PVTCKIR+ + T+ L +G + + VHGRTK
Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTK 179
>UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3;
Bacteroidales|Rep: Putative TIM-barrel enzyme -
Bacteroides fragilis
Length = 324
Score = 77.4 bits (182), Expect = 3e-13
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E + LAPM + RL+ K+GAD+VYTE + +RS V++T
Sbjct: 10 ERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRS-------------VNKTT 56
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGV 469
+ C+EE+ V +Q+ D + A++VE I DIN GCP + G G
Sbjct: 57 QKLTI--CDEERP-VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGA 113
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRT 643
+L K +I + +VD + IPVT K R+ + ++L +L GI A+A+HGRT
Sbjct: 114 GMLQNIPKMLEITRAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRT 173
Query: 644 K 646
+
Sbjct: 174 R 174
>UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5;
Firmicutes|Rep: TRNA-dihydrouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 324
Score = 77.0 bits (181), Expect = 4e-13
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 4/181 (2%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N +I APM I R+LA ++G +V TE + D L + +L+
Sbjct: 10 NPVIAAPMAGITDKAFRILAREFGCGLVCTEMVSDQALLHGNPKTCSLLDVAG------- 62
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGVA 472
E V +Q+ + A + A + E A I DINMGCP +K G G A
Sbjct: 63 ---------EAGPVSVQIFGSNAACMAEAAGIAESRGAGIIDINMGCPTPKIVKNGEGAA 113
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIR---ILKTPEATLELVNKLVSSGIKAIAVHGRT 643
L+ +P+KA +I++ +V+ + +PVT K+R +P A +EL +G A+ VHGRT
Sbjct: 114 LMREPEKAARIVRAVVERVKVPVTVKMRKGWDDNSPNA-VELARLAAEAGAAAVTVHGRT 172
Query: 644 K 646
+
Sbjct: 173 R 173
>UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 367
Score = 76.2 bits (179), Expect = 6e-13
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR-RFNDILNTVDYVDQTDGTI 301
I PMVR LP R L +Y DIVY+ ++ +++R++ R +D+
Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDL-------------- 87
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
+ E +++Q+G + A LK ++V I IN GCP + I+ G+G AL+
Sbjct: 88 ---STNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIY 144
Query: 482 KPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D ++ + D + + KIRI + + T+EL KL +G+ I +HGRT+
Sbjct: 145 NSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTR 201
>UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1;
Desulfotalea psychrophila|Rep: TRNA-dihydrouridine
synthase - Desulfotalea psychrophila
Length = 328
Score = 75.8 bits (178), Expect = 8e-13
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 4/189 (2%)
Frame = +2
Query: 92 FPINMN-YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 268
F I N + + +LAP+ L RLL ++GAD +E + +++R ++L +
Sbjct: 2 FTIGPNQFSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLAS 61
Query: 269 VDYVDQTDGTIVFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEF 445
+ E++ V QL G + A L + IDINMGCP
Sbjct: 62 LP----------------EERPVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRK 105
Query: 446 SIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIK 619
K G G AL+S P+ AY +++++VDN IPVT K R + T +E +G
Sbjct: 106 VTKKGAGAALMSTPELAYDVIRSVVDNTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAA 165
Query: 620 AIAVHGRTK 646
A+AVHGRT+
Sbjct: 166 AVAVHGRTR 174
>UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=8; Desulfuromonadales|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Geobacter sp. FRC-32
Length = 343
Score = 75.8 bits (178), Expect = 8e-13
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 2/184 (1%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
++ EN +ILAPM + LPMR+LA + GA + +TE + +R ++ D+L D +
Sbjct: 26 SLQLENNLILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRR-DPM 84
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
D+ G +F D + A+LVE IDINMGCP + G
Sbjct: 85 DRPMGIQIFGD---------------DPQLLAEGARLVEQYGELIDINMGCPVRKVVGSG 129
Query: 461 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVH 634
G ALL +P K I+K + S+P+T KIR LE+ + G+ + +H
Sbjct: 130 AGSALLREPAKVGMIIKAVRKATSLPLTIKIRTGWGAADHTFLEIGRIAEAEGVDGVTLH 189
Query: 635 GRTK 646
R++
Sbjct: 190 PRSR 193
>UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=31; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
1 - Bacillus subtilis
Length = 333
Score = 75.8 bits (178), Expect = 8e-13
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 4/186 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
++ +N+++LAPM + RL ++GA +V E + D L + R +L Y+
Sbjct: 6 DIQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGML----YI 61
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 454
D E +K + LQ+ + ++ AK V+ + A IDINMGCP K
Sbjct: 62 D------------EREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITK 109
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVN--KLVSSGIKAIA 628
G L PDK Y+++ +VD ++ PVT K+R+ + + N + +G KA+A
Sbjct: 110 CDAGAKWLLDPDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVA 169
Query: 629 VHGRTK 646
+HGRT+
Sbjct: 170 LHGRTR 175
>UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Psychroflexus torquis ATCC 700755|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Psychroflexus torquis ATCC 700755
Length = 338
Score = 75.4 bits (177), Expect = 1e-12
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Frame = +2
Query: 86 LQFPINMNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDIL 262
+ FP+ ++ + I LAPM + L RLLA + GAD TE R + N L
Sbjct: 1 MAFPVGVSLDPVPIFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTR--KNTNSWL 58
Query: 263 NTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKE 442
+TD +K + Q+ D + K ++E IDIN GCP
Sbjct: 59 KV-----ETD---------PREKPFIPQIFGGDISEMAKTVGMLEDRSDVIDINFGCPAP 104
Query: 443 FSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGI 616
+ G ALL PDK +++ +++ ++P+T K+R+ P LE+ +L G+
Sbjct: 105 KVCRNDAGAALLRDPDKVVSMVRRCIESTNVPITVKMRLGTGSGPNTALEISKRLADEGV 164
Query: 617 KAIAVHGRT 643
I VHGRT
Sbjct: 165 MRICVHGRT 173
>UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2;
Culicidae|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 391
Score = 75.4 bits (177), Expect = 1e-12
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS-KRRFNDILNTVDYVDQTDGTI 301
I APMVR L R L YG D+ +T ++ F +S K R N+
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEF-------------- 71
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
T + V+ Q + L ++ V +D+N GCP+ ++++ G G ALL
Sbjct: 72 ---TTNRDDTPVIAQFAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLR 128
Query: 482 KPDKAYQILKTLVDNL--SIPVTCKIRIL-KTPEATLELVNKLVSSGIKAIAVHGRT 643
P+ +L T+ NL + V+ K+R+L K+ AT+++ +L + GI I VHGRT
Sbjct: 129 TPELIADMLSTVRRNLPSTFSVSVKVRLLQKSLSATIDMCRQLEACGITFITVHGRT 185
>UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=28;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 4-like -
Homo sapiens (Human)
Length = 317
Score = 75.4 bits (177), Expect = 1e-12
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 5/188 (2%)
Frame = +2
Query: 95 PINMNYENKII--LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNT 268
PI M + +++ APMVR L R L KY D+ YT ++ F++S + + T
Sbjct: 18 PIEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTT 77
Query: 269 VDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFS 448
+Q D C +++Q D A++V IDIN GCP+ ++
Sbjct: 78 ----NQGD-------CP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWA 121
Query: 449 IKGGMGVALLSKPDKAYQILKTLVDNLSIP---VTCKIRILKTPEATLELVNKLVSSGIK 619
+ G G L++KP+ ++K + + + P V+ KIRI + T++L K ++G+
Sbjct: 122 MAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVS 181
Query: 620 AIAVHGRT 643
I VHGRT
Sbjct: 182 WITVHGRT 189
>UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to MGC79829 protein - Nasonia vitripennis
Length = 346
Score = 74.9 bits (176), Expect = 1e-12
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 2/175 (1%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
+ APMVR LP R L KY DI +T ++ F++S + + +T ++ D ++
Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFST----NEGDSPLI 72
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
+ +E V + ++V +D+N GCP+ +++K G G LL+K
Sbjct: 73 VQFAAKEVDDFV------------EATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTK 120
Query: 485 PDKAYQILKTLVDNLSIP--VTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
P +++ + + + P V+ KIRILK + T+E + +G+ + VH RT
Sbjct: 121 PQLVKELVSNVRNRIPKPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHART 175
>UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putative;
n=1; Trypanosoma brucei|Rep: TRNA-dihydrouridine
synthase 1, putative - Trypanosoma brucei
Length = 520
Score = 74.9 bits (176), Expect = 1e-12
Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 10/184 (5%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD----QTD 292
++ PMV LP RLL +YGA + YT F +S +T + ++
Sbjct: 76 VVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPPHSAMESG 135
Query: 293 GTIVFRTCE------EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 454
G + + + Q D L A+ VE A+D N+GCP+ + +
Sbjct: 136 GNVAANDSTSNDGALDNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGCPQGIARR 195
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVH 634
G G L+ + + IL L L +PVT K+RI TL+ L +GI + VH
Sbjct: 196 GHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVH 255
Query: 635 GRTK 646
GRT+
Sbjct: 256 GRTR 259
>UniRef50_Q4Q231 Cluster: Dihydrouridine synthase domain
protein-like protein; n=3; Leishmania|Rep:
Dihydrouridine synthase domain protein-like protein -
Leishmania major
Length = 455
Score = 74.1 bits (174), Expect = 3e-12
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 43/216 (19%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR---RFNDILNTV-DYVDQTD 292
ILAPMVR+ + R L +GAD+V+TEE++ K +R R+ + + +YV
Sbjct: 28 ILAPMVRVCSPGFRALCGAHGADVVFTEEVVAAKLATCQREVVRYPTVDTPMAEYVSYDP 87
Query: 293 ------GTIVFRTC-------------EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI 415
T+V T + VLQLG D AR A + +D+ I
Sbjct: 88 FKHTYKRTVVLSTPVLPDTTYGGQKADRISAPRTVLQLGVADPARGAAAALVCSNDIDGI 147
Query: 416 DINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL---VDNLS---------IPVTCKIRI 559
DINMGCPK+FS+ G G AL+ +P+ I++ + V++ S + V+ K R+
Sbjct: 148 DINMGCPKKFSVHNGFGAALMKRPEVGGAIVRAVHGAVNSDSNVEARGGKRVAVSLKTRL 207
Query: 560 LKTPEATLELVNKLVSSG--------IKAIAVHGRT 643
T EAT+ ++ ++++ + AI +H RT
Sbjct: 208 QDTAEATVGMLRAILAASQHTPANPVLHAITIHART 243
>UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 527
Score = 73.7 bits (173), Expect = 3e-12
Identities = 50/174 (28%), Positives = 82/174 (47%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
+LAPMV L R+ KYGA + +T + F+ + L V + D +V
Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALV----KADRPLV 131
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
+ C KV L C +LVE +D+N+GCP+ + +G G L +
Sbjct: 132 VQFC---ANKVDTFLAAC---------RLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDE 179
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D +++ + D +P++CKIR+ + T+E +LV +G + VHGRT+
Sbjct: 180 VDLICEMVSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTR 233
>UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2;
Desulfitobacterium hafniense|Rep: Putative
uncharacterized protein - Desulfitobacterium hafniense
(strain Y51)
Length = 326
Score = 73.3 bits (172), Expect = 5e-12
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Frame = +2
Query: 320 EEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 499
E ++V G+ E A A VE D IDINMGCP +K G G ALL A
Sbjct: 68 EASPRIVQLFGSEPEVMAKAAALAVERDAEIIDINMGCPTPKIVKNGEGSALLQDLPLAQ 127
Query: 500 QILKTLVDNLSIPVTCKIRILKTPEATL--ELVNKLVSSGIKAIAVHGRTK 646
+I + +V + +PVT K+R+ T E + EL ++ + G++ ++VHGRT+
Sbjct: 128 RIAEAVVKAVEVPVTVKMRLGWTAERIVAPELAKRVEAVGVQMVSVHGRTR 178
>UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;
n=1; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 610
Score = 73.3 bits (172), Expect = 5e-12
Identities = 38/123 (30%), Positives = 64/123 (52%)
Frame = +2
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 457
+D+ G E + +++Q D L AK VEH A+DIN GCP+ + +G
Sbjct: 133 LDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRG 192
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHG 637
G L + + ++++ TL +NLS+PVT K RI + T+ + ++G + + HG
Sbjct: 193 HYGSFLQDEWELIHKLISTLHENLSVPVTAKFRIFPDLDKTIAYARMMEAAGAQILTCHG 252
Query: 638 RTK 646
RT+
Sbjct: 253 RTR 255
>UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase;
n=21; Alphaproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Rhodobacter capsulatus
(Rhodopseudomonas capsulata)
Length = 324
Score = 73.3 bits (172), Expect = 5e-12
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
++ + ++LAPM I LP R + ++GA +V +E + + L +K +V
Sbjct: 7 SLRLDPPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKP-------SVRAK 59
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 454
Q + T T +QL + A + AK+V D+ A IDINMGCP + +
Sbjct: 60 AQAELTAGLPTS--------VQLAGREAAPMAEAAKIVA-DMGAEIIDINMGCPAK-KVT 109
Query: 455 GGM-GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAI 625
GG+ G AL+ PD A ++++ +V + +PVT K+R+ + E+ + ++G+K I
Sbjct: 110 GGLSGAALMRNPDHALRLIEAVVGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMI 169
Query: 626 AVHGRTK 646
+HGRT+
Sbjct: 170 VIHGRTR 176
>UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Syntrophobacter fumaroxidans MPOB|Rep: Putative
TIM-barrel protein, nifR3 family - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 352
Score = 72.9 bits (171), Expect = 6e-12
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 3/177 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++LAPM + R L +GA +V TE + +R++R T+D Q
Sbjct: 24 LVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRA------TLDLCRQQHPVG 77
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALL 478
V + +Q+ D A + A+LVE AA IDIN GCP ++ G G LL
Sbjct: 78 V---------PLAVQVFGRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILL 128
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRT 643
PD+ +++ + +S+PVT KIR+ L +LVS+G+ AI VHGRT
Sbjct: 129 KDPDRLAAMVEAVKRAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRT 185
>UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 190
Score = 72.9 bits (171), Expect = 6e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFND 256
M Y +K++LAPMVR+GTLP RLLA +YGADI Y EE+ID KFL+ +R N+
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNE 51
>UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protein;
n=1; Trichomonas vaginalis G3|Rep: TIM-barrel protein,
nifR3 family protein - Trichomonas vaginalis G3
Length = 301
Score = 72.9 bits (171), Expect = 6e-12
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +2
Query: 254 DILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMG 430
++++ + V + TI ++KKV +Q+ D + A+++ ++D + +DINMG
Sbjct: 24 EMVSAMALVYENKKTIDLLDISPKEKKVAVQIFGSDPDVMGEAARILNDYDFSYVDINMG 83
Query: 431 CPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSS 610
CP +K G LLS P Y I+K++V N + PVT K+R ++++ + + ++
Sbjct: 84 CPAPKIVKNNSGSHLLSNPSLVYDIVKSVVKNSNKPVTAKVRKGIGGVSSMKAIKNIEAA 143
Query: 611 GIKAIAVHGRTK 646
G + VHGRT+
Sbjct: 144 GASFVTVHGRTR 155
>UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,
putative; n=9; Pezizomycotina|Rep: Dihydrouridine
synthase family protein, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 541
Score = 72.5 bits (170), Expect = 8e-12
Identities = 39/123 (31%), Positives = 64/123 (52%)
Frame = +2
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 457
+D+ D ++ + +++Q D L+ A+ V A+D+N+GCP+ + KG
Sbjct: 108 LDKNDNSLYLDGNPAFDRPLIVQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIARKG 167
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHG 637
G L D Y+++ L L IPVT K RI ++ E TLE ++S+G I +HG
Sbjct: 168 HYGAFLQEDWDLIYKLINRLHKELPIPVTAKFRIQESKEKTLEYAKMILSAGASIITLHG 227
Query: 638 RTK 646
RT+
Sbjct: 228 RTR 230
>UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Strongly similar to tRNA-dihydrouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 341
Score = 72.1 bits (169), Expect = 1e-11
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ ++ILAPM +P RL+ ++G + YTE +++ V
Sbjct: 28 NIPVYGELILAPMAGFSDMPYRLICRRFGMSMSYTE----------------VVSVSGIV 71
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKG 457
T +EE++ V Q+ DE + + K +E IDINMGC
Sbjct: 72 WNNKKTFKLLDFKEEERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGK 131
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI---LKTPEATLELVNKLVSSGIKAIA 628
G G +L P K ++ L +LS+PVT KIR+ KT +E+ L +G IA
Sbjct: 132 GAGAGMLKHPSKISKMFNNLTGSLSVPVTGKIRLGWDHKT-RNYIEVARILEENGASLIA 190
Query: 629 VHGRTK 646
VHGRT+
Sbjct: 191 VHGRTR 196
>UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
TIM-barrel enzyme - Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC11152)
Length = 329
Score = 71.7 bits (168), Expect = 1e-11
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E + LAPM + + RL+ ++GAD+VYTE + +RS + LN D
Sbjct: 10 ERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSD------ 63
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGV 469
+++ V +Q+ D A ++ A++ E I DIN GCP + G G
Sbjct: 64 ----------DERPVAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGAGA 113
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAVHGRT 643
+L +I + +V ++IPVT K R+ + ++L +L GI A+++HGRT
Sbjct: 114 GMLRNIPLMLEITREVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRT 173
Query: 644 K 646
+
Sbjct: 174 R 174
>UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Magnetospirillum gryphiswaldense
Length = 335
Score = 71.7 bits (168), Expect = 1e-11
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 4/181 (2%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N +ILAPM + +P R L + GA +V +E + +R+ R+ + +
Sbjct: 18 NPVILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASN--------- 68
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCP-KEFSIKGGMGV 469
C EE V QL C+ + A++ + A IDINMGCP K+ ++KG G
Sbjct: 69 ------CAEEHPMSV-QLAGCEPEVMAEAARMNADRGAAIIDINMGCPVKKVAVKGEAGS 121
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRT 643
AL+ A Q+++ V + +PVT K R+ L SGIK + +HGRT
Sbjct: 122 ALMKDEILAGQLMEATVRAVDVPVTLKCRMGWDHNRLNAPRLARIAQESGIKMVTIHGRT 181
Query: 644 K 646
+
Sbjct: 182 R 182
>UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3;
Mollicutes|Rep: TRNA dihydrouridine synthetase -
Mesoplasma florum (Acholeplasma florum)
Length = 325
Score = 71.3 bits (167), Expect = 2e-11
Identities = 52/186 (27%), Positives = 97/186 (52%), Gaps = 4/186 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEEL-IDWKFLRSKRRFNDILNTVDY 277
N+ + K++ PM + P RL++ + GAD+V E + ++ +K+ F+ +
Sbjct: 5 NVEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLA----- 59
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPK-EFSIK 454
V++ + + + + + ++ DE V+ D+ ID+N+GCP + +++
Sbjct: 60 VEKKEHPMSMQIFGNDVESFIVATKWIDEN--------VDCDI--IDLNIGCPAPKVAVR 109
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLEL-VNKLV-SSGIKAIA 628
G +LL P+ Y I+K +V+N S PVT KIR+ E+ + V+KL+ +G I
Sbjct: 110 SASGSSLLKTPELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVEVSKLIEKAGASGIT 169
Query: 629 VHGRTK 646
VHGRT+
Sbjct: 170 VHGRTR 175
>UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR -
Leptospira interrogans
Length = 329
Score = 71.3 bits (167), Expect = 2e-11
Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ KI L+PM I P R + K+GA YTE +NT + V
Sbjct: 6 NVTIPGKISLSPMAGISDSPTRRICRKFGAAFSYTE----------------FVNTDELV 49
Query: 281 DQTDGTIVFRTCEEEKKKVVLQL-GTCDE--ARALKVAKLVEHDVAAIDINMGCP-KEFS 448
+ + + E++ + Q+ G E A A ++ + ++ D+ ID+NMGC ++ S
Sbjct: 50 HRAPKALKMFRYKLEERPITFQIFGNRLEIIAEAAEIIQELKPDI--IDLNMGCSTRKVS 107
Query: 449 IKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKA 622
++G G LL +P A +I++ + ++IPVT KIRI T LE+ L SG+ A
Sbjct: 108 LRGA-GAGLLRRPLLAGKIIEAIKKRVNIPVTAKIRIGWDSTSRNYLEVSKILEESGVDA 166
Query: 623 IAVHGRTK 646
+ VHGRTK
Sbjct: 167 LTVHGRTK 174
>UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 307
Score = 71.3 bits (167), Expect = 2e-11
Identities = 47/173 (27%), Positives = 82/173 (47%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
+APMV L R L +YGA + YT + F+ S + +I +T D ++
Sbjct: 20 VAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFST----STRDRPLLA 75
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
+ C + + + L+ A ++ +DIN GCP+ + +G G L+
Sbjct: 76 QFCANDPEIL------------LRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDW 123
Query: 488 DKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++ L + L +PVT KIR+ E TL+ + ++G + +AVHGRT+
Sbjct: 124 KTVEALIRKLDEELPVPVTAKIRVYDDLETTLKYAKMVEAAGAQIVAVHGRTR 176
>UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Novel
protein - Mus musculus (Mouse)
Length = 194
Score = 70.9 bits (166), Expect = 2e-11
Identities = 52/174 (29%), Positives = 82/174 (47%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
++APMV L RLL+ ++GA + YT L F+R + L Y D
Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENL----YCD------- 68
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
C E++ +V + A L + AID+N+GCP+ + +G G L +
Sbjct: 69 --VCPEDRPLIV------------QAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 114
Query: 485 PDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D +++ + LS+PVTCKIR+ + T+ L +G + + VHGRTK
Sbjct: 115 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTK 168
>UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07217.1 - Gibberella zeae PH-1
Length = 510
Score = 69.7 bits (163), Expect = 6e-11
Identities = 36/106 (33%), Positives = 54/106 (50%)
Frame = +2
Query: 329 KKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 508
+ + +Q D L AK V A+D+N+GCP+ + KG G L D ++++
Sbjct: 102 RPLFVQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 161
Query: 509 KTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
L L +PVT KIRIL T E TL ++ +G + VHGR +
Sbjct: 162 NILHKELPVPVTAKIRILDTKEETLAYAQNVLKAGASILTVHGRKR 207
>UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 365
Score = 69.7 bits (163), Expect = 6e-11
Identities = 42/136 (30%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Frame = +2
Query: 254 DILNTVDYVDQTDGTI-VFRTCEEEKKKVVLQLGTCDEARALK-VAKLVE-HDVAAIDIN 424
D++N ++ ++ T+ + +TC E+ V G+ E + +K A+L+E V +IDIN
Sbjct: 59 DLVNARGLLEGSEKTLQLTQTCPEDSPFAVQIFGS--EPQQMKDAAQLLESRGVHSIDIN 116
Query: 425 MGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNK- 598
MGCP +KGG G +++ +P +++T+V+ + IPV+ K+R+ E + ++
Sbjct: 117 MGCPVNRIVKGGAGASMMCRPSDTVSLVQTVVEAVKIPVSVKMRLGWDDSELSAPFFSRE 176
Query: 599 LVSSGIKAIAVHGRTK 646
G+ A+A+HGRT+
Sbjct: 177 FEKVGVVAVAIHGRTR 192
>UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6;
Saccharomycetales|Rep: Dihydrouridine synthase of tRNA -
Pichia stipitis (Yeast)
Length = 613
Score = 68.9 bits (161), Expect = 1e-10
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 7/188 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ N I++P+ +G LP R L K GADI Y+E + L++ N +
Sbjct: 240 LDFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQAT-------NAEWALP 292
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD---VAAIDINMGCPKEFSIK 454
+ T E +Q+ T A KVA+++ + V+ +++N GCP + +
Sbjct: 293 KAHRT--------EYPGYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYR 344
Query: 455 GGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIRI--LKTPEATLELVNKLVS-SGIKA 622
G G ALL +P + +ILK + + IPVT KIR + LV +L++ + + A
Sbjct: 345 QGQGSALLEQPARLVRILKAMNASSGDIPVTVKIRTGSKENKNTAKTLVERLLAENDVAA 404
Query: 623 IAVHGRTK 646
I +HGR++
Sbjct: 405 ITLHGRSR 412
>UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;
Bdellovibrio bacteriovorus|Rep: Nitrogen regulation
protein nifR3 - Bdellovibrio bacteriovorus
Length = 352
Score = 68.5 bits (160), Expect = 1e-10
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG ++A A V +LVE AIDINMGCP + ++K GVAL+ P A ++++ V N
Sbjct: 82 LGNEEDAIAESVKRLVEWGAEAIDINMGCPVQKALKHNYGVALMGDPAYAAEVVRMTVKN 141
Query: 527 LSIPVTCKIRIL---KTPEATLELVNKLVSSGIKAIAVHGRT 643
++PV+ K+R + K + L V+ L SG + +H RT
Sbjct: 142 STVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLHPRT 183
>UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=20;
Streptococcus|Rep: Possible transcriptional regulator -
Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311)
Length = 350
Score = 68.5 bits (160), Expect = 1e-10
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ ++ +LAPM + R +A ++ A +V E + + L + + +L+
Sbjct: 37 NVEIPHRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHI---- 92
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIK 454
+E + + +QL D + A ++ + A +DINMGCP +K
Sbjct: 93 ------------DENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVK 140
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLV--SSGIKAIA 628
G L PDK Y I+K + L IP+T K+R ++ L + N L S+G+ A+A
Sbjct: 141 NEAGAKWLKDPDKIYHIVKEVTSVLDIPLTVKMR-TGWSDSDLAVENALAAESAGVSALA 199
Query: 629 VHGRTK 646
+HGRT+
Sbjct: 200 MHGRTR 205
>UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;
n=1; alpha proteobacterium HTCC2255|Rep:
tRNA-dihydrouridine synthase, putative - alpha
proteobacterium HTCC2255
Length = 324
Score = 68.1 bits (159), Expect = 2e-10
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++L+P+ I LP R L +GA +V +E + + ++ + D + +GT
Sbjct: 11 VLLSPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQKGK---DARARAELGFNVEGTS 67
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAI-DINMGCPKEFSIKGGMGVALL 478
V Q+ D + AKL+E + A I DINMGCP + + G G AL+
Sbjct: 68 V-------------QIAGRDAFWMSECAKLIEGNGAKIIDINMGCPAKSVVNGASGSALM 114
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
PD A ++++ +V+ + IPVT K R+ +L + GI+ I +HGRT+
Sbjct: 115 RTPDLALKLIEAVVNAVDIPVTLKTRLGWDHNDLNAADLSSSAEKIGIQMITIHGRTR 172
>UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 570
Score = 67.7 bits (158), Expect = 2e-10
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ +K+ LAP+ IG LP R + +YGADI E + L+ +
Sbjct: 214 IDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQ-------------- 259
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 457
Q++ +V R E+ V L G + K A+L+ E DV IDIN GCP +
Sbjct: 260 QSEWALVKRHSSEDIFGVQL-CGAFPDTMT-KCAELLQKETDVDFIDINTGCPIDLVFNK 317
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAI 625
G G AL+ + K QI++ + + IP+T KIR K +LV L G +
Sbjct: 318 GAGSALMERKGKLQQIVQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMV 377
Query: 626 AVHGRTK 646
+HGR++
Sbjct: 378 TIHGRSR 384
>UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 464
Score = 67.7 bits (158), Expect = 2e-10
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = +2
Query: 359 DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP 538
D L AK+ A+D+N+GCP+ + KG G L D +Q++K L +NL IP
Sbjct: 120 DPQALLNAAKIAAPYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQLIKILHENLDIP 179
Query: 539 VTCKIRILKTPEATLELVNKLV 604
VT KIRIL+T EATL+ ++
Sbjct: 180 VTAKIRILETKEATLKYAQNVL 201
>UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;
n=10; Rhodobacterales|Rep: TRNA-dihydrouridine synthase,
putative - Silicibacter pomeroyi
Length = 327
Score = 66.9 bits (156), Expect = 4e-10
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
+ILAPM I P R L +++GA +V +E + + +++K + V+ T
Sbjct: 14 VILAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENT---- 69
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALL 478
+QL D + A+ V + IDINMGCP + G G ALL
Sbjct: 70 ------------AVQLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALL 117
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
PD A ++++ +V + +PVT K R+ T ++ + +G++ + +HGRT+
Sbjct: 118 KTPDHALRLIEAVVAAVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTR 175
>UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 330
Score = 66.9 bits (156), Expect = 4e-10
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
+G E A +V+ A+D+NMGCP + ++KGG+G A+L P YQ+L ++ +
Sbjct: 69 MGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLASMREQ 128
Query: 527 LSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ ++ KIR E E++ +V SG +AVH R +
Sbjct: 129 VPCALSAKIRAGFDNKEGVFEILQAIVDSGADYLAVHPRRR 169
>UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_49916_51304 - Giardia lamblia
ATCC 50803
Length = 462
Score = 66.9 bits (156), Expect = 4e-10
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
+APMV LP RLL +YG ++ +T + S + +++ + + + D +V
Sbjct: 21 IAPMVDGSELPYRLLTRRYGVELAWTPMHSTNTLVTSSKAMTQLVDELKHGESIDRPLVL 80
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
+ L T + A +VE +NMGCP+ +++G G L+
Sbjct: 81 QLSGNNPSNFELAYNTLVQMGAGCCFDVVE-------LNMGCPQAVALRGKYGAYLMGHL 133
Query: 488 DKAYQILKTLV-----DNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
D A +IL+TLV L V K R+ + + T+++ +L S+GI +HGRT+
Sbjct: 134 DLAEEILRTLVAVTARSGLGHKVAVKTRLDISDKDTVKMCLRLCSTGIAMFTLHGRTR 191
>UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase B
- Serratia marcescens
Length = 334
Score = 66.9 bits (156), Expect = 4e-10
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N +I APM I P R L GA + +E +L++ V +TD
Sbjct: 10 NCLIAAPMAGITDRPFRTLCHAMGAGMAVSE----------------MLSSNPEVWRTDK 53
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGVA 472
+ + +E +Q+ CD A++ V IDINMGCP + + G A
Sbjct: 54 SRLRMVHSDEPGIRSVQIAGCDPDDMAAAARINVASGAQLIDINMGCPAKKVNRKLAGSA 113
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAVHGRTK 646
LL PD +IL +VD + +PVT KIR PE +E+ GI+A+ +HGRT+
Sbjct: 114 LLQYPDLVKRILHAVVDAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTR 173
>UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 660
Score = 66.5 bits (155), Expect = 5e-10
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ +K+ LAP+ G LP R + ++GADI E + L+ +
Sbjct: 311 VDFRDKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQA------------- 357
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 457
++ ++ R E+ V QL C + A+L+ DV +DIN GCP + K
Sbjct: 358 -SEWALLKRHASEDLFGV--QLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKK 414
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G L+++ K QI++ + L +P+T KIR + + +L+ ++ G+ I +
Sbjct: 415 GGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITL 474
Query: 632 HGRTK 646
HGR++
Sbjct: 475 HGRSR 479
>UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 family;
n=2; Clostridiales|Rep: Putative TIM-barrel protein,
NifR3 family - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 318
Score = 66.1 bits (154), Expect = 7e-10
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
EN++ APM + R+LA +G +V +E + D + + R + I ++
Sbjct: 10 ENRVCAAPMAGVSDKAYRVLARDFGCGLVCSEMVSDKGLVYGQGRTSKIADS-------- 61
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGV 469
EK+ V +Q+ + A++VE A IDINMGCP +K G G
Sbjct: 62 --------SGEKRPVAVQIFGSEAESMATAARIVEEMGADIIDINMGCPTPKIVKNGEGA 113
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRT 643
AL+ K+ I++ ++ + +PVT K+R + LEL KL G+ AI +H R+
Sbjct: 114 ALMLDITKSRGIVREVLRVVKVPVTVKMRKGWDENSINCLELAQKLEEEGVAAICLHPRS 173
Query: 644 K 646
+
Sbjct: 174 R 174
>UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 407
Score = 66.1 bits (154), Expect = 7e-10
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 514
++ Q + + A+L+ V ID+N GCP+ ++ G+G ALL KP+ +++
Sbjct: 152 LIAQFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMVRG 211
Query: 515 LVDNL--SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ D + PV+ KIRI E T +L++ + +GI + +HGRT+
Sbjct: 212 VKDRMGWGWPVSIKIRIDSEQEKTEQLISNALQAGISHLTIHGRTR 257
>UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 362
Score = 65.7 bits (153), Expect = 9e-10
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
I+LAPM + P R LA YG + +TE + + LR + R D G
Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVD-------PRLGGGAE 66
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALL 478
R +QL CD + A+ VE A IDINMGCP + G G AL+
Sbjct: 67 AGRA-----GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALM 121
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
A +IL+ +V +++PV+ K+R+ +EL S+GI + VHGRT+
Sbjct: 122 RDLPLAARILEAVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTR 179
>UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultured
bacterium 578|Rep: NifR3/Smm1 family protein -
uncultured bacterium 578
Length = 322
Score = 65.7 bits (153), Expect = 9e-10
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
+K++LAPM P R++ + GA + +E ++ K L LNT +++
Sbjct: 10 SKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHL---------LNT----NKSKH 56
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVA 472
+ FR+ E+ + +Q+ + + AK +E IDINMGCP + G A
Sbjct: 57 RLDFRS---EQSPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSA 113
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE-ATLELVNKLV-SSGIKAIAVHGRTK 646
L+ I+K +V+ ++IPVT K+R E + K+ +GIK +A+HGRT+
Sbjct: 114 LMKNEKLVEDIIKAVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTR 173
>UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 355
Score = 65.7 bits (153), Expect = 9e-10
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +2
Query: 389 LVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKT 568
L +H AA+D+NMGCP G G ++ PD A Q++ +VD +SIPVT K+R+
Sbjct: 100 LEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVAEVVDAVSIPVTVKMRLGWD 159
Query: 569 PEATLE--LVNKLVSSGIKAIAVHGRTK 646
++ L + +G+ AI VHGRT+
Sbjct: 160 RDSITAPLLAREFEQAGVAAITVHGRTR 187
>UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3
family; n=23; Bacteroidetes/Chlorobi group|Rep:
TIM-barrel protein, putative, NifR3 family -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 333
Score = 65.3 bits (152), Expect = 1e-09
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++LAPM + + R++ ++GAD+VY+E FL + D L + Q GT
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSE------FLSA-----DAL-----IRQVAGTF 56
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALL 478
+E ++ + +Q+ D A ++ A+L E ID+N GCP + G G +L
Sbjct: 57 RKMAIDESERPMAVQIYGRDVASMVEAARLCESAGPNLIDLNFGCPVKRVAGKGAGSGML 116
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+I + +V + +PVT K R+ + ++L +L GI A+ +HGRT+
Sbjct: 117 RNIPLMIEITREVVKAVKLPVTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTR 174
>UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1;
Petrotoga mobilis SJ95|Rep: Dihydrouridine synthase, DuS
- Petrotoga mobilis SJ95
Length = 301
Score = 64.9 bits (151), Expect = 2e-09
Identities = 47/178 (26%), Positives = 79/178 (44%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
EN+I LAPM P R + ++GA +TE + +R + +L
Sbjct: 3 ENQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLP--------- 53
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
++ + + +QL + + ++ AK ++H + IDIN CP +K G G A
Sbjct: 54 --------QKGEDNIGVQLFGNETTKFIEAAKSIQHLASWIDINAACPVNKVVKKGSGAA 105
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
LL P I+ L ++ +PV K+R+ E+ + +G I VHGRT+
Sbjct: 106 LLKNPKLLGDIVFNLKKSIDLPVGVKVRLGYDQINIEEVAETVEKAGADYIIVHGRTR 163
>UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 64.9 bits (151), Expect = 2e-09
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 5/175 (2%)
Frame = +2
Query: 131 APMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY-VDQTDGTIVF 307
APMV L RL ++ GA + +T+ + + + +L +++ + T +
Sbjct: 17 APMVGQSDLAFRLQTVQNGATLTWTQMYLAPELSSDQYMLESLLKSLEMGSNATKNMARY 76
Query: 308 RTC--EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
R ++ V+QL + + ++ A+ V AID+N+GCP+ + +G G LL
Sbjct: 77 RASPLHDQSAPQVVQLAGNNVQQLVEAARRVAPYADAIDLNLGCPQRHAEQGHYGACLLP 136
Query: 482 KPD--KAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
K + +I+ +V + +P+T KIR+ E T +L L +G + VH R
Sbjct: 137 KQNWPLVAEIVSGMVQAVDVPITTKIRLPVPKEQTAQLAVMLAHAGSSLVTVHPR 191
>UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase;
n=39; Proteobacteria|Rep: Probable tRNA-dihydrouridine
synthase - Rickettsia prowazekii
Length = 327
Score = 64.9 bits (151), Expect = 2e-09
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ + +ILAPM + L R L ++GA +V E+I + + K R + + +
Sbjct: 6 NIELSSNVILAPMSDVTDLEFRKLVKRFGAGLV-VSEMIASRAMIMKSRQSMQKCAIMHD 64
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
D T + CE + V+ + +E K+ ID+N GCP + + G
Sbjct: 65 DPTSACVQLAGCEPD---VIAEAAKMNEDMGAKI----------IDLNFGCPAKKVVGGY 111
Query: 461 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVH 634
G AL+ A +I + V + IPVT K+RI L +SG++ + VH
Sbjct: 112 AGSALMRDEQLAAKIFEATVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVH 171
Query: 635 GRTK 646
GRT+
Sbjct: 172 GRTR 175
>UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protein
NifR3; n=3; Acetobacteraceae|Rep: Nitrogen assimilation
regulatory protein NifR3 - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 371
Score = 64.5 bits (150), Expect = 2e-09
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 4/182 (2%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E+ +ILAP+ + LP R LA GA +V +E + W +R NT+
Sbjct: 34 EDPVILAPLSGVTDLPFRQLARDLGAGLVVSEMIASWAMIRENE------NTMRMARMA- 86
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCP-KEFSIKGGMG 466
E+ +QL CD + AK+ V+ IDIN GCP K+ +I G
Sbjct: 87 ----------ERGPNAVQLAGCDPKAMAQAAKISVDGGANLIDINFGCPVKKVAIGQMAG 136
Query: 467 VALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGR 640
AL+ A ++L+ +++PVT K+R+ + L SGI+ + VHGR
Sbjct: 137 SALMRDEVLAGKLLEATARAVNVPVTLKMRMGWDHNSLNAPRLAKIAEESGIRLVTVHGR 196
Query: 641 TK 646
T+
Sbjct: 197 TR 198
>UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n=1;
Bdellovibrio bacteriovorus|Rep: Transcription regulator
homolog yacF - Bdellovibrio bacteriovorus
Length = 337
Score = 63.7 bits (148), Expect = 4e-09
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 4/188 (2%)
Frame = +2
Query: 95 PINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVD 274
P+ N +LAPM I R K A +V TE L+ + ++
Sbjct: 3 PVEALKTNPFVLAPMAGITDHAFRTFIKKLDASVVVTE-LVS-------------ASGIE 48
Query: 275 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSI 451
Y ++D T+ + +E ++ + +QL + + A++ E D +D+N GCP +
Sbjct: 49 Y--KSDRTLKLMSFDESQRPIGIQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVV 106
Query: 452 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI---LKTPEATLELVNKLVSSGIKA 622
K G G A+L P +++ T+ + IP+T KIR + AT E+ N + G+
Sbjct: 107 KKGAGSAILKDPAAVQKMVSTVKAAIKIPLTIKIRTGWDANSRNAT-EICNIAYNEGVSW 165
Query: 623 IAVHGRTK 646
+A+HGRT+
Sbjct: 166 VAIHGRTR 173
>UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2;
Proteobacteria|Rep: NifR3/Smm1 family protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 338
Score = 63.7 bits (148), Expect = 4e-09
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +2
Query: 350 GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL 529
G+C + A ++ IDINMGCP + K G ALL +P + +I++++V+ +
Sbjct: 73 GSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSVVNAV 132
Query: 530 SIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
IPVT KIR + +E+ +SGI ++AVHGRT+
Sbjct: 133 DIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTR 173
>UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep:
CG10495-PA - Drosophila melanogaster (Fruit fly)
Length = 396
Score = 63.7 bits (148), Expect = 4e-09
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
+ APMVR L R L G + +T +I +D +N + Q +
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMI-----------SDSINNSEKARQNE---- 70
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
F T +++ ++ Q D + A+L+ V ID+N GCP+ +++ G G +L +
Sbjct: 71 FSTGADDQP-LIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQ 129
Query: 485 PDKAYQILKTLVDNL--SIPVTCKIRILKTPEA---TLELVNKLVSSGIKAIAVHGRT 643
P+ +Q+++ + L V+ K+R+L E+ T++L +L S+G+ + +HGRT
Sbjct: 130 PELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRT 187
>UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 322
Score = 63.7 bits (148), Expect = 4e-09
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Frame = +2
Query: 98 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELID--WKFLRSKRRFNDILNTV 271
IN E I+LAP + L R+L KY + +T + W S R
Sbjct: 10 INGLGEVPIVLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRN-------- 61
Query: 272 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 451
Y F+TC +++ +++Q+ DE+ + AK ++ IDIN GC + +
Sbjct: 62 SY---------FQTCSQDRP-LIIQMSGNDESELIACAKDLQQFAVGIDINCGCTQHIAR 111
Query: 452 KGGMGVALLSKPDK---AYQILKTLVDNLSIPVTCKIRILKTPEA------TLELVNKLV 604
+G G +++ +K +++K +V ++++P++ K R++ + T + +L
Sbjct: 112 RGQYGYFMVNNENKRKNVIEMVKNIVASINVPLSIKFRLIDGEDGKPDVDITCKFAKELE 171
Query: 605 SSGIKAIAVHGRTK 646
+G+ I+VHGR K
Sbjct: 172 DAGVSLISVHGRAK 185
>UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;
n=2; Deltaproteobacteria|Rep: Dihydrouridine synthase
family protein - Geobacter sulfurreducens
Length = 325
Score = 63.3 bits (147), Expect = 5e-09
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N +ILAPM I LP RLLA + GA + +TE + +R ++ ++L +V D+ G
Sbjct: 14 NNLILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPG-DRPLG 72
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 475
+QL D +VA V+ IDINMGCP + + G G AL
Sbjct: 73 ---------------IQLFGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSAL 117
Query: 476 LSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEAT--LELVNKLVSSGIKAIAVHGRTK 646
+ +PDK I++ + +P+T KIR + E +++ G A+ +H R++
Sbjct: 118 MREPDKVRAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSR 176
>UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 343
Score = 63.3 bits (147), Expect = 5e-09
Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
EN +++AP+ LP R A G +TE ++D + ++ Y +
Sbjct: 15 ENALLMAPLSGFTDLPYRRAARAGGCRFAFTE-MVD-------------VASLTYARERS 60
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGV 469
++ R EEE V QL D + A +V E++ + +D N+GCP K G G
Sbjct: 61 AGMLRRGPEEEFLGV--QLVGADHEFIRRAADVVNEYEFSVVDFNLGCPVPKVAKKGAGA 118
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRIL--KTPEATLELVNKLVSSGIKAIAVHGRT 643
L D A + + PVT KIRI+ + P TL L L G +AI VHGR
Sbjct: 119 ELGRHLDAALACFAIIAERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVHGRI 178
Query: 644 K 646
K
Sbjct: 179 K 179
>UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep:
Putative TIM-barrel protein, nifR3 family - Candidatus
Nitrosopumilus maritimus SCM1
Length = 320
Score = 63.3 bits (147), Expect = 5e-09
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 3/181 (1%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ ++ LAPM + +RL K GA +V TE + + + + + T+
Sbjct: 5 FSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQE---- 60
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
F E+++ + +QL D K A +VE ID NMGCP + G
Sbjct: 61 -----FIEFSEQERPISVQLFGSDLYALEKAATIVEPYFDIIDYNMGCPAPHITQQMAGG 115
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATL---ELVNKLVSSGIKAIAVHGR 640
ALL + + QI +TLV+ + PVT KIR T + ++ GI+ I H R
Sbjct: 116 ALLQEVNLTQQIFETLVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPR 175
Query: 641 T 643
T
Sbjct: 176 T 176
>UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214;
Proteobacteria|Rep: tRNA-dihydrouridine synthase B -
Yersinia pestis
Length = 321
Score = 63.3 bits (147), Expect = 5e-09
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLE 586
IDINMGCP + + G ALL PD QIL +V+ + +PVT KIR +PE +E
Sbjct: 94 IDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAVVNAVDVPVTLKIRTGWSPEHRNCIE 153
Query: 587 LVNKLVSSGIKAIAVHGRTK 646
+ + GI+A+ +HGRT+
Sbjct: 154 IAQLAENCGIQALTIHGRTR 173
>UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to
dihydrouridine synthase 4-like; n=3; Coelomata|Rep:
PREDICTED: similar to dihydrouridine synthase 4-like -
Tribolium castaneum
Length = 451
Score = 62.9 bits (146), Expect = 6e-09
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 3/176 (1%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS-KRRFNDILNTVDYVDQTDGTI 301
I APMVR L R L Y D+ YT ++ F +S K R N+ ++ D +
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMN-----DTPL 81
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
+ + KV +G A +V +D+N GCP+ ++ G+G +L
Sbjct: 82 ITQFAAN---KVYDFVGA---------AYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLE 129
Query: 482 KPDKAYQILKTLVDNLSIP--VTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
KP+ Y ++K + + P V+ K+R+ K ++E+ +L G+ + VHGRT
Sbjct: 130 KPEVIYDLVKQCRNVIPKPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVHGRT 185
>UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24;
Clostridia|Rep: Nitrogen regulation protein nifR3 -
Clostridium tetani
Length = 322
Score = 62.9 bits (146), Expect = 6e-09
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+ + + LAP+ + L R L + G +VYTE + +K F D T D
Sbjct: 6 LELKGNVFLAPLAGVTDLAFRGLCKRMGCTLVYTE------MVSAKALFYDSDKTKD--- 56
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD--VAAIDINMGCPKEFSIKG 457
+ R +EE V G + A V K + V IDINMGCP +K
Sbjct: 57 ------MLRFSKEELPIAVQIFGKEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKN 110
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G AL+ P A I++++ + PVT K R LE + +SG A+ +
Sbjct: 111 GEGSALMKNPKLASDIVESIKKVSTKPVTVKFRKGFDNDNINALEFAKIMENSGADALTI 170
Query: 632 HGRTK 646
HGRT+
Sbjct: 171 HGRTR 175
>UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter
ruber DSM 13855|Rep: NifR3 family enzyme - Salinibacter
ruber (strain DSM 13855)
Length = 443
Score = 62.9 bits (146), Expect = 6e-09
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
+ + LAPM + P R+L +YGAD++YTE + LR + + L D
Sbjct: 74 DRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLEIFD------ 127
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEAR-ALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
EE + + G DE R A + DV IDIN GCP ++ G
Sbjct: 128 --------EERPIGIQVWGGGIDEVRNATPMVDAAGPDV--IDINFGCPVRKIVQKDGGA 177
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRT 643
+L DK I +++ + PVT K R+ ++ +++ L G+ A+ VH RT
Sbjct: 178 GVLRNLDKMRNITAAVMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHART 237
Query: 644 K 646
+
Sbjct: 238 R 238
>UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 family;
n=1; Pedobacter sp. BAL39|Rep: Probable TIM-barrel
protein, NifR3 family - Pedobacter sp. BAL39
Length = 335
Score = 62.9 bits (146), Expect = 6e-09
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E ++LAPM + P R + + G D++YTE + +R + L+ +Y ++
Sbjct: 12 EFPLLLAPMEDVSDPPFRFVCKQSGVDMMYTEFISSEGLIRDAAKSRAKLDIFEY-ERPI 70
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
G +F + + ++ A ++A + D+ +DIN GCP + G G A
Sbjct: 71 GIQIFGSEIDHMRE------------ATEIASMAGPDL--MDINYGCPVKQVACRGAGSA 116
Query: 473 LLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
LL DK ++ K +V+ +PVT K R+ + E+ +L GI+ + +HGRT+
Sbjct: 117 LLQDIDKMVEMTKAVVNATHLPVTVKTRLGWDDNTKNVEEVAERLQDIGIQGLTIHGRTR 176
>UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 287
Score = 62.9 bits (146), Expect = 6e-09
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 4/177 (2%)
Frame = +2
Query: 128 LAPMVRIGTLPMR-LLALKYGADIVYTEELIDWKFLRSKR--RFNDILNTVDYVDQTDGT 298
LAP+ + G P R L A ++GA++V +E + R R + D D
Sbjct: 6 LAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGDCFGAQ 65
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
I EE ++ G E +D+N GCP + K G+G ALL
Sbjct: 66 IATNAIEEGVNAALIASG--------------EFGADFVDLNCGCPIHETWKRGLGAALL 111
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
KP K ++++ + + +P+T KIR+ + + + L ++G A+ VHGRTK
Sbjct: 112 KKPAKLERLVEGIASRIDVPLTVKIRLGIDSSSQARRIAEGLENAGASAVVVHGRTK 168
>UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4;
Legionella pneumophila|Rep: Nitrogen regulation protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 329
Score = 62.5 bits (145), Expect = 8e-09
Identities = 37/86 (43%), Positives = 46/86 (53%)
Frame = +2
Query: 383 AKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRIL 562
AKL IDIN GCPK K G G ALL P K I+ + +SIP+T KIRI
Sbjct: 94 AKLQSLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIAIISRVRAAISIPLTIKIRI- 152
Query: 563 KTPEATLELVNKLVSSGIKAIAVHGR 640
+ E L L ++ +G A+ VHGR
Sbjct: 153 QNNEKDLTLAKQIEDAGAHALIVHGR 178
>UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1;
Ostreococcus tauri|Rep: tRNA-dihydrouridine synthase -
Ostreococcus tauri
Length = 639
Score = 62.5 bits (145), Expect = 8e-09
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = +2
Query: 98 INMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 277
+++ ++ KI +AP+ +G LP R + GADI +E + L+ R+
Sbjct: 263 VSLEFKGKIYVAPLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRK---------- 312
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSI 451
+ +V R E+ + + G D + A+L++++V ID+NMGCP +
Sbjct: 313 ----EWALVRRHPIEKCFGIQICGGYPD--LMTRCAELLDNEVHCDFIDVNMGCPIDGVC 366
Query: 452 KGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATL--ELVNKLVSSGIK 619
G G +L+ D+ ++++++ S PVT K+R+ P + ++++K S G
Sbjct: 367 AKGAGGSLMRDTDRLKRVVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAY 426
Query: 620 AIAVHGRTK 646
A +HGRT+
Sbjct: 427 AATLHGRTR 435
>UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine
synthase-like protein C45G9.2; n=2; Caenorhabditis|Rep:
Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2 - Caenorhabditis elegans
Length = 284
Score = 62.5 bits (145), Expect = 8e-09
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 3/172 (1%)
Frame = +2
Query: 137 MVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTC 316
MVR L R L Y D+ +T + F+ S++ + L+ C
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSV---------------C 45
Query: 317 EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 496
E + +V Q T D + A++V +D+N GCPK G G ALLSKP+
Sbjct: 46 EGDSPLIV-QFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104
Query: 497 YQILKTLVDNLSIP---VTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
+++ + P V+ KIRI E T++L K ++G+ + VHGRT
Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRT 156
>UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781
protein; n=3; Deuterostomia|Rep: PREDICTED: similar to
MGC53781 protein - Strongylocentrotus purpuratus
Length = 655
Score = 62.1 bits (144), Expect = 1e-08
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ ++K++LAP+ +G LP R + K GADI E + L+ +
Sbjct: 278 LDVKDKLLLAPLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQ-------------- 323
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 457
++ ++ R E+ V L G D + A+L+ D+ IDIN+GCP +
Sbjct: 324 SSEWALLRRHPSEDIFGVQLCGGFPDTMT--RCAELLNDRLDIDFIDINVGCPIDLVYHK 381
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G L+++ K +I++ + L IP+T K+R + ++V ++ G + V
Sbjct: 382 GAGSGLMNRMGKFQEIVRGMSSVLDIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTV 441
Query: 632 HGRTK 646
HGRT+
Sbjct: 442 HGRTR 446
>UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1;
Thiomicrospira crunogena XCL-2|Rep: Dihydrouridine
synthase - Thiomicrospira crunogena (strain XCL-2)
Length = 320
Score = 61.3 bits (142), Expect = 2e-08
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
I LAPM I R + + GA +E + K LR + ++ + D+T
Sbjct: 12 IALAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAK-----SSTRHADKT---- 62
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
E ++V LGT E ID+NMGCP + G AL+
Sbjct: 63 ------ETSPRIVQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMG 116
Query: 482 KPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAVHGRTK 646
+P++ I K+L + + +PVT KIR + +E+ G+KAI +HGRT+
Sbjct: 117 QPERVADIFKSLTEAIDLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTR 173
>UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1;
Ruminococcus flavefaciens|Rep: Putative dihydrouridine
synthase - Ruminococcus flavefaciens
Length = 332
Score = 61.3 bits (142), Expect = 2e-08
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ LAPM + RL+ +YGA V +E ++ K + Y
Sbjct: 9 NVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSE-MVSAK-------------GICYS 54
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
D+ + T EEE+ V G+ + A V ++++ IDINMGCP + G
Sbjct: 55 DRKTAELCTVT-EEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTG 113
Query: 461 MGVALLSKPDKAYQILKTLVDNL-SIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAV 631
G AL+ P A I + V PVT KIR + ++ E+ L +SG AIAV
Sbjct: 114 AGSALMKDPALAAAITEAAVKAAGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAV 173
Query: 632 HGRTK 646
HGRT+
Sbjct: 174 HGRTR 178
>UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein yohI - Protochlamydia
amoebophila (strain UWE25)
Length = 326
Score = 60.9 bits (141), Expect = 3e-08
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Frame = +2
Query: 344 QLGTCDEARALKVAKLVEHDVAA-IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLV 520
QL D ++A+ VE A ID+N GCP G G +LL +PD Y++ K++V
Sbjct: 73 QLMGSDPELMAEMARAVERRGAQRIDLNCGCPSNTVTGRGAGSSLLKEPDHLYKVAKSMV 132
Query: 521 DNLSIPVTCKIRILKTPEATLELVNKLV--SSGIKAIAVHGRTK 646
+ +++PVT K+R T + +L N L +SGIK + +H RTK
Sbjct: 133 EAVNVPVTAKLRSGFT-DTSLFHDNLLAAQASGIKYLTLHPRTK 175
>UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;
Aurantimonadaceae|Rep: Nitrogen regulation protein nifr3
- Fulvimarina pelagi HTCC2506
Length = 344
Score = 60.9 bits (141), Expect = 3e-08
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 4/181 (2%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
N++ AP+ I +P R L+ ++GA +V +E + +F++ +G
Sbjct: 18 NRVFAAPLSGISDVPFRRLSRRFGAGLVVSEMVASGEFVKGAE---------------EG 62
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVA 472
+ R + +QL D + A+ L + IDINMGCP + + G G A
Sbjct: 63 KL--RALRDGPGVHTVQLAGRDPIWMEEAARRLADEGADLIDINMGCPAKKVVGGLSGSA 120
Query: 473 LLSKPDKAYQILKTLVDNL-SIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRT 643
L+ +PD A+ I++ V + PV+ K+R+ + E+ + ++G+ I VHGRT
Sbjct: 121 LMREPDLAFSIVEATVRGAGATPVSLKMRLGWCRDSMNAAEIAVRAEAAGVTMITVHGRT 180
Query: 644 K 646
+
Sbjct: 181 R 181
>UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4;
Thermotogaceae|Rep: Dihydrouridine synthase DuS -
Fervidobacterium nodosum Rt17-B1
Length = 322
Score = 60.9 bits (141), Expect = 3e-08
Identities = 52/172 (30%), Positives = 80/172 (46%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
LAPM + P R L L++GA +T E+I K + + N+I Y + D
Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAYFAFT-EMISAKSVIINVKINEI-----YFPRQD----- 61
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
EK +V +QL D A + A +V+ +D+N GCP IK G G ALL
Sbjct: 62 -----EKDRVGVQLFGSDYAELSEAAAIVQEKGLWVDLNAGCPVSKVIKKGAGSALLKDL 116
Query: 488 DKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
+ ++++ + L T K RI + ++ N L+ + A+ VHGRT
Sbjct: 117 GEFRKVVRAMRSVLK-RFTVKTRIGWEKDEFEKIYNILLEENVDAVFVHGRT 167
>UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase;
n=4; Rhizobiales|Rep: Putative tRNA-dihydrouridine
synthase - Bradyrhizobium sp. (strain ORS278)
Length = 317
Score = 60.9 bits (141), Expect = 3e-08
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +2
Query: 338 VLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 514
V+QL C+ + AK+ A IDINMGCP G G AL+ D A +++
Sbjct: 51 VVQLAGCEAHWMAEGAKVAADGGADIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEA 110
Query: 515 LVDNLSIPVTCKIRILKTPEATL---ELVNKLVSSGIKAIAVHGRTK 646
V+ + +PVT K+R L E +L EL + ++G++ I VHGRT+
Sbjct: 111 TVEAVDVPVTLKMR-LGWDERSLNAPELARRAEAAGVQLITVHGRTR 156
>UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 361
Score = 60.9 bits (141), Expect = 3e-08
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++++ K+ +AP+ +G LP R + GADI +E + L+ R+ +L
Sbjct: 4 LDFKGKLYVAPLTTVGNLPFRRVCTDLGADITVSEMAMASNLLKGDRKEWALL------- 56
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 457
R EK + G + A + A+L++++V+ ID+NMGCP +
Sbjct: 57 --------RRHPSEKCYGIQVCGGYPDLMA-RCAELIDNEVSCDFIDVNMGCPIDGVCAK 107
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATL--ELVNKLVSSGIKAI 625
G G +L+ D+ +++T+ S PVT K+R+ P + +++ + + G A
Sbjct: 108 GAGSSLMRDTDRLKNVVRTMAAVSSTPVTIKLRMGYFDDPSKYVAHDIIPRAKAWGAFAA 167
Query: 626 AVHGRTK 646
+HGRT+
Sbjct: 168 TLHGRTR 174
>UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 312
Score = 60.9 bits (141), Expect = 3e-08
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +2
Query: 86 LQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILN 265
L+F N E+ I LAPM + R L + G + +T F + +
Sbjct: 3 LEFLENSKRESIIFLAPMADVNDYSFRKLCRQNGVSLCWT-------------GFINAHH 49
Query: 266 TVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEF 445
V Q D + F T + EK VV LG+ E + AK VE+ I++N GC F
Sbjct: 50 WVTRTKQRDRDVWFTTRDNEKNLVVQLLGSNLE-ELVSCAKDVENFCDMIELNCGCTHCF 108
Query: 446 SIKGGMGVALLSKP---DKAYQILKTLVDNLSIPVTCKIRILK------TPEATLELVNK 598
+ + G G L+ D A +++ L+ +++ PV+ KIR++ + E T++
Sbjct: 109 ASRSGCGFFLIDTQKHRDSALILIQNLIKSINKPVSIKIRLISDDNSVPSLERTVKFAQD 168
Query: 599 LVSSGIKAIAVHGRTK 646
L G+ I VH RT+
Sbjct: 169 LERVGVSLITVHARTQ 184
>UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG10463-PA - Nasonia vitripennis
Length = 584
Score = 60.5 bits (140), Expect = 3e-08
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++++KI+LAP+ +G LP R + ++GADI E + + L+ R
Sbjct: 286 IDWKDKIMLAPLTTVGNLPFRRICKEFGADITCGEMALAPRLLKGVRE------------ 333
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 457
+ +V R E + +Q+ + + +L+ E +V +D+N+GCP + K
Sbjct: 334 --EWALVKR--HESEDLFGVQIAGNNPGVLTRCCQLLNDETEVDFVDLNVGCPIDLVYKQ 389
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G +L++ + ++K+ + L IP T K R + +L++K G I +
Sbjct: 390 GGGCGMLNRLNILESVVKSATEVLDIPFTVKTRTGVYADKPIAHKLMSKFKDWGASMINI 449
Query: 632 HGRTK 646
HGR++
Sbjct: 450 HGRSR 454
>UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep: Dihydrouridine
synthase - Dichelobacter nodosus (strain VCS1703A)
Length = 318
Score = 60.5 bits (140), Expect = 3e-08
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++LAPM I LP R L ++G+ E ++D + ++ + +
Sbjct: 14 VLLAPMAGISDLPYRSLCQRFGSHYTIAE-MVDAR--------------PQFLAMPESQL 58
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALL 478
+ ++ + ++QL D + A++++ IDINMGCP + K G ALL
Sbjct: 59 RLQFDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALL 118
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLV-SSGIKAIAVHGRTK 646
S + +IL + +SIPVT K R+ T+E V K+ ++G+ A+ VHGRT+
Sbjct: 119 SDLPQVEKILAQVTRVVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTR 176
>UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 359
Score = 60.5 bits (140), Expect = 3e-08
Identities = 51/174 (29%), Positives = 76/174 (43%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K I+APMV LP RLL +Y AD+ YT ++ K + +I
Sbjct: 27 KFIVAPMVDQSELPFRLLCRRYSADLAYTP-MLHAKIFSENENYRNIH------------ 73
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F T ++K + G D + + + +++DV+AIDIN+GCP+ + KG G LL
Sbjct: 74 --FHTSSDDKPLIAQFCGN-DPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLL 130
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
P L+ V K + L V ++G KA+ VHGR
Sbjct: 131 EYPQ--------LITKGFASVDTKFMLF--TRGWLFSVQSCQANGCKALTVHGR 174
>UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 595
Score = 60.5 bits (140), Expect = 3e-08
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 2/181 (1%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ K++LAP+ +G LP R + +GAD+ +E + + R ++ +L + D
Sbjct: 233 FAEKLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIF 292
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
+ +E A+AL+ + +D +DIN GCP E +K G G
Sbjct: 293 GIQLAVSRPQE----------AATFAQALEASGF-SYDF--LDINCGCPVEKIVKSGCGC 339
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATL-ELVNKLVSSGIKAIAVHGRT 643
L + ++ ++++L S PV K RI L TL + +++ + G A+ VHGR+
Sbjct: 340 GLWQRTERLRDVVESLAIYQSRPVAIKCRIGLDEDIPTLHQQIHRYSAWGAAAVTVHGRS 399
Query: 644 K 646
+
Sbjct: 400 R 400
>UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22;
Alphaproteobacteria|Rep: Nitrogen regulation protein -
Bradyrhizobium japonicum
Length = 371
Score = 60.1 bits (139), Expect = 4e-08
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Frame = +2
Query: 338 VLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 514
V+QL C+ + A++ E + A IDINMGCP G G AL+ D A ++
Sbjct: 105 VVQLAGCEAHWMAEGARIAEAEGADIIDINMGCPARHVTGGQSGSALMRDLDHAVGLIDA 164
Query: 515 LVDNLSIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRTK 646
+ + +PVT K+R+ + EL + ++GIK + VHGRT+
Sbjct: 165 TIAAVKVPVTLKMRLGWDDRSRNAPELARRAEAAGIKLVTVHGRTR 210
>UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Marinomonas sp. MWYL1
Length = 341
Score = 60.1 bits (139), Expect = 4e-08
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Frame = +2
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLS 481
F +E + + LQLG D K AK+ E +++N+GCP + +G L++
Sbjct: 65 FLRYDECEHPIALQLGGSDAVALGKCAKMAEQAGFDEVNLNVGCPSDRVQNSLIGACLMA 124
Query: 482 KPDKAYQILKTLVDNLSIPVTCKIRI-LKTPE---ATLELVNKLVSSGIKAIAVHGR 640
PDK + ++ + DN SIPVT K RI L E + V + ++G+ VH R
Sbjct: 125 HPDKVKEAMRAMQDNCSIPVTIKHRIGLDDQEDYSVVRDFVGDVATTGVTTFIVHAR 181
>UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep:
H0613H07.1 protein - Oryza sativa (Rice)
Length = 685
Score = 60.1 bits (139), Expect = 4e-08
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ K+ LAP+ +G LP R L GADI E + L+ +
Sbjct: 328 IDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQA------------- 374
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 457
++ ++ R E+ V + G + A + +LV+++ + IDINMGCP + +
Sbjct: 375 -SEWALLRRHSSEDLFGVQI-CGAYPDTVA-RTVELVDNECSVDFIDINMGCPIDIVVNK 431
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G +LL+KP + I++ P+T K+R + +V+ + G AI V
Sbjct: 432 GAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITV 491
Query: 632 HGRTK 646
HGR++
Sbjct: 492 HGRSR 496
>UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=12;
Eutheria|Rep: tRNA-dihydrouridine synthase 3-like - Homo
sapiens (Human)
Length = 650
Score = 60.1 bits (139), Expect = 4e-08
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ K+ LAP+ G LP R + ++GAD+ E + L+ + +L
Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKR----- 355
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 457
CE+ +QL K A+L+ V +DIN+GCP + K
Sbjct: 356 --------HQCEDI---FGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 404
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G AL+++ K QI++ + L +P+T KIR + + L+ +L G+ + +
Sbjct: 405 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTL 464
Query: 632 HGRTK 646
HGR++
Sbjct: 465 HGRSR 469
>UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=15; Cyanobacteria|Rep: Probable tRNA-dihydrouridine
synthase 1 - Synechocystis sp. (strain PCC 6803)
Length = 355
Score = 60.1 bits (139), Expect = 4e-08
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Frame = +2
Query: 317 EEEKKKVVLQLGTC-DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDK 493
+ + + +QL C + A K V ++DINMGCP K G G +LL +P
Sbjct: 93 DPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAV 152
Query: 494 AYQILKTLVDNLSIPVTCKIRI-LKTPEATL-ELVNKLVSSGIKAIAVHGRTK 646
A I+KT+V + +PVT K R+ E + E +L +G + + +HGRT+
Sbjct: 153 AEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTR 205
>UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: NifR3
protein - Deinococcus radiodurans
Length = 406
Score = 59.7 bits (138), Expect = 6e-08
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 1/174 (0%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
+LAPM PMR LA + GA + E+I + L +L + + + +
Sbjct: 95 VLAPMAGYSDAPMRQLAAEQGA-LWTVSEMISARGL--------VLGS-----EQESLSL 140
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV-AAIDINMGCPKEFSIKGGMGVALLS 481
R E+ + V G + A V K AAID+N+GCP ++G G LL
Sbjct: 141 GRPYPGEQGRAVQLFGADPDVLADAVGKAEAWFAPAAIDLNLGCPVP-KVRGKGGACLLQ 199
Query: 482 KPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
P+ AY++++ + + V+ KIR+ ++E+ L ++G + VHGRT
Sbjct: 200 TPEVAYELVRAMRQATGLDVSAKIRLGWDENRSVEIAQGLEAAGAAVVTVHGRT 253
>UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15;
Pezizomycotina|Rep: Uncharacterized conserved protein -
Aspergillus oryzae
Length = 730
Score = 59.7 bits (138), Expect = 6e-08
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 12/178 (6%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDIL--NTVDYVDQT--D 292
+LAP+ G LP R L ++ GA Y+E + ++ +R ++ + + + T
Sbjct: 322 VLAPLTTQGNLPFRRLCIELGAQFTYSEMALSMPLIQGQRGEWALMRAHETEMLPPTISP 381
Query: 293 GTIVFRTCEEEKK-KVVLQLGTCDEARALKVAKLVE---HDVAAIDINMGCPKEFSIKGG 460
G V + + K + Q+ +ALK +++ ++ ID+N GCP + + G
Sbjct: 382 GADVVQGYDHSKDFRFGAQIAANKHWQALKATEVLSAYTPNLRVIDLNCGCPIDLLFREG 441
Query: 461 MGVALLSKPDKAYQILKTL-VDNLSIPVTCKIRI---LKTPEATLELVNKLVSSGIKA 622
G ALL P K +IL+ + + IP+T KIR+ +P A L+L +L+ G ++
Sbjct: 442 AGSALLEHPSKLERILRGMNAVSQEIPITAKIRMGTRDNSPNA-LKLAERLILGGYES 498
>UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 609
Score = 59.7 bits (138), Expect = 6e-08
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 4/188 (2%)
Frame = +2
Query: 95 PINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVD 274
P+++ Y KI+ +P+ +G LP R L K GAD+ Y+E + ++ ++
Sbjct: 288 PLDL-YHKKIV-SPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTN--SEWALPKA 343
Query: 275 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 454
+ + G V C + Q EA A V+++ E I++N GCP + +
Sbjct: 344 HTSEFPGFGVQVACSK-----AWQAAKAAEALANSVSEISE-----INLNSGCPIDLLYR 393
Query: 455 GGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIRI-LKTPEATLE-LVNKLVS-SGIKA 622
G G ALL P + + L + + IP+T KIR K E LV +LV+ + + A
Sbjct: 394 QGSGSALLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAA 453
Query: 623 IAVHGRTK 646
I +HGR++
Sbjct: 454 ITLHGRSR 461
>UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=7;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 3-like -
Mus musculus (Mouse)
Length = 637
Score = 59.7 bits (138), Expect = 6e-08
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ K+ LAP+ G LP R + ++GAD+ E + L+ + +L
Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKR----- 342
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 457
CE+ +QL K A+L+ DV +DIN+GCP + K
Sbjct: 343 --------HPCEDI---FGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 391
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATL--ELVNKLVSSGIKAIAV 631
G G AL+++ K QI++ + L +P+T K+R +L L+ +L G+ + +
Sbjct: 392 GGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTL 451
Query: 632 HGRTK 646
HGR++
Sbjct: 452 HGRSR 456
>UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=20; Cyanobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Synechococcus sp. (strain
CC9902)
Length = 356
Score = 59.3 bits (137), Expect = 8e-08
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLE 586
IDINMGCP K G G L+ P+ A QIL+ +VD +SIPVT K R+ + +
Sbjct: 121 IDINMGCPVRKIAKKGGGSGLIRDPNLATQILEAVVDAVSIPVTVKTRLGWCGSSSDPIT 180
Query: 587 LVNKLVSSGIKAIAVHGRTK 646
+L ++G + + +HGRT+
Sbjct: 181 WCRQLQNAGAQMLTLHGRTR 200
>UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Moorella thermoacetica ATCC 39073|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Moorella thermoacetica (strain ATCC 39073)
Length = 334
Score = 59.3 bits (137), Expect = 8e-08
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 4/179 (2%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
+I+APM RLLA + GA + YTE + + + + + +L+
Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDL----------- 64
Query: 302 VFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+ E V +QL G E A V A ID+NMGCP +K G G AL+
Sbjct: 65 -----KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALM 119
Query: 479 SKPDKAYQILKTLVDNLS-IPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRTK 646
+A I+ +V +PVT K+R+ ++ +E +V +G A+A+HGRT+
Sbjct: 120 RDLPRAAAIVAAMVRAAGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTR 178
>UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Putative TIM-barrel protein, nifR3 family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 328
Score = 59.3 bits (137), Expect = 8e-08
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+N + K+ LAPM R L ++GAD+ TE + ++ ++++
Sbjct: 2 LNIKGKLFLAPMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQKTKELISF----- 56
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCPKEFSIKG 457
E+EK K V G+ A + K++ E + IDINMGCP +K
Sbjct: 57 ----------SEDEKIKGVQIFGSDPHVMA-EAVKIIQDEFEYDFIDINMGCPVPKVVKS 105
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAV 631
G G AL+ P A +I++ + PV+ KIR E E + SG I V
Sbjct: 106 GEGSALMKNPSLAAKIVEEVAKVSRKPVSVKIRKGFDEENINAPEFACIMQESGASFITV 165
Query: 632 HGRTK 646
HGRT+
Sbjct: 166 HGRTR 170
>UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Dihydrouridine synthase family protein - Candidatus
Desulfococcus oleovorans Hxd3
Length = 326
Score = 58.8 bits (136), Expect = 1e-07
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
+ ILAP+ I P R LA G +VY+E + S F Y + G
Sbjct: 11 RTILAPLAGITDAPFRRLAKAAGCALVYSE------MVSSHGLF--------YQSEKTGA 56
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
++ RT EE V G A + IDIN GC + +K G G AL+
Sbjct: 57 ML-RTTPEEAPFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALM 115
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEAT--LELVNKLVSSGIKAIAVHGRT 643
A ++++ + D +SIP+T K+R P+ + L + G+ A+A+H RT
Sbjct: 116 KDLPLAAEVIQAVRDAVSIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRT 172
>UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3 precursor; n=2; delta proteobacterium MLMS-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3
precursor - delta proteobacterium MLMS-1
Length = 313
Score = 58.4 bits (135), Expect = 1e-07
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 4/178 (2%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++ AP+ LP RLL +YGA + Y+E +L+ V + TI
Sbjct: 15 LVAAPLAGYSDLPFRLLCREYGAGLCYSE----------------MLSCHGLVRRQPATI 58
Query: 302 VFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
++ +++QL G E A L + IDINMGCP +K G G AL+
Sbjct: 59 EMLATTAAERPLLMQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALM 118
Query: 479 SKPDKAYQILKTLVDNL-SIPVTCKIRILKTPEA--TLELVNKLVSSGIKAIAVHGRT 643
P+ A I + +PVT KIR + + LV+ G A+ +H RT
Sbjct: 119 RDPELAAAITGAVTAAAGDLPVTVKIRSGWNHKQINAPDFARLLVAHGAAAVTIHART 176
>UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Mariprofundus ferrooxydans PV-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Mariprofundus ferrooxydans PV-1
Length = 341
Score = 58.4 bits (135), Expect = 1e-07
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 3/181 (1%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
+N ++LAPM I LP R + ++G ++ TE + + R + D
Sbjct: 17 DNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTERMAELGD------ 70
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGV 469
++ V +Q+ D + A+ V H +DINMGCP + K G
Sbjct: 71 ----------DEHPVSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGS 120
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLV-SSGIKAIAVHGRT 643
A+L ++L +V + +PVT KIR ++ + ++ SGI+ + VHGRT
Sbjct: 121 AMLRDEALVARVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRT 180
Query: 644 K 646
+
Sbjct: 181 R 181
>UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 3,
putative - Trypanosoma brucei
Length = 528
Score = 58.4 bits (135), Expect = 1e-07
Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 7/186 (3%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ NK++LAP+ +G LP R + +YGADI E I ++ ++ + ++
Sbjct: 164 FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEMAI--------------VHNLNRLQKS 209
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA---IDINMGCPKEFSIKGG 460
+ +++ R E+ LQ+ A+ A+ VE + +DIN GCP + + G
Sbjct: 210 EWSLLRRHSSEDI--FGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSG 267
Query: 461 MGVALLS-KPDKAYQILKTLVDNLSIPVTCKIRI---LKTPEATLELVNKLVSSGIKAIA 628
G L K ++ ++++LV + S PVT K R+ + PE + + + G A+
Sbjct: 268 CGCGLWERKGNRLRDVVQSLVAHQSKPVTIKCRMGPDEENPELHKHIAD-YETWGAAAVT 326
Query: 629 VHGRTK 646
+HGR++
Sbjct: 327 IHGRSR 332
>UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 321
Score = 58.4 bits (135), Expect = 1e-07
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E + LAPMV +G + R+L ++G D+ +T + ++ RSK ++Y
Sbjct: 12 EYPVCLAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQ---QIEY----- 63
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
EE + +V+Q+ + L AK + IDIN+GC ++ + +G G
Sbjct: 64 --------SEEDRPLVIQISGSIDVDLLTTAKSMSEFGVPIDINLGCCQKVAKRGEYGYF 115
Query: 473 LLSKPDK---AYQILKTLVDNLSIPVTCKIRILKTPEA-------TLELVNKLVSSGIKA 622
++ K ++K++ +++P+ KIR L T E+ T++ L +G
Sbjct: 116 MVDSEQKRQNVVNLIKSIPSEITVPLYVKIRAL-TDESGIPSIPITVDFAKHLEEAGASL 174
Query: 623 IAVHGRT 643
I +HGR+
Sbjct: 175 ITIHGRS 181
>UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Methylococcus capsulatus
Length = 327
Score = 58.0 bits (134), Expect = 2e-07
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
+ILAPM + LP R L ++GA + +E + L++ R+
Sbjct: 12 VILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKSR---------------- 55
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAK-LVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+ + E + +Q+ D + A+ V+ IDINMGCP + G ALL
Sbjct: 56 LRQDHRGEPGPISVQIVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALL 115
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLV-SSGIKAIAVHGRTK 646
IL+ +V + +PVT KIR + + K+ S+GI+A+ VHGRT+
Sbjct: 116 RDEKLVANILEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTR 173
>UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein
Y37E11B.5; n=2; Caenorhabditis|Rep: Putative
uncharacterized protein Y37E11B.5 - Caenorhabditis
elegans
Length = 554
Score = 58.0 bits (134), Expect = 2e-07
Identities = 53/169 (31%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Frame = +2
Query: 95 PINM-NYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 271
P+NM + + K LAP+ +G LP R + + YGADI E + L +L
Sbjct: 196 PLNMGSLDGKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKR- 254
Query: 272 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 451
CE+ V L G D + DV IDINMGCP +
Sbjct: 255 ------------HPCEKIFG-VQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVN 301
Query: 452 KGGMGVALLSKPDKAYQILKTLVDNLS--IPVTCKIR------ILKTPE 574
+ G G AL S+P K +++L L P+T KIR +LK PE
Sbjct: 302 QKGGGCALPSRPQKLFEVLAATKSVLGGCCPLTVKIRTGMKEGVLKAPE 350
>UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1;
Marinomonas sp. MWYL1|Rep: Dihydrouridine synthase DuS -
Marinomonas sp. MWYL1
Length = 335
Score = 57.6 bits (133), Expect = 2e-07
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG+ E A + ID+N GCP + G G LL PD Y I+ + D
Sbjct: 88 LGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDIMSAIRDT 147
Query: 527 L--SIPVTCKIRILKTPEATL-ELVNKLVSSGIKAIAVHGRTK 646
L IPV+ KIR+ EA L + V + ++G+ + +HGRTK
Sbjct: 148 LPSDIPVSAKIRLGFEDEALLFDNVAAIEAAGVGTLTIHGRTK 190
>UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase;
n=2; Treponema|Rep: Probable tRNA-dihydrouridine
synthase - Treponema pallidum
Length = 340
Score = 57.6 bits (133), Expect = 2e-07
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 10/190 (5%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ + + AP+ R +A+++ A YTE + S+ D LNT +
Sbjct: 15 LSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTE------MVSSEAMVRDSLNTKRLI- 67
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV--AAIDINMGCPKEFSIKG 457
R E + G+ + A + AKL+ + IDIN GCP K
Sbjct: 68 --------RRASNETHYAIQIFGS-NPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKT 118
Query: 458 GMGVALLSKPDKAYQILKTLVD-----NLSIPVTCKIRILKTPEATL---ELVNKLVSSG 613
G G AL +P + Y+++K + D + IPVT KIR EA L E V +G
Sbjct: 119 GAGAALTREPTRLYEVVKAVADAVYAQDARIPVTVKIR-AGWEEAHLTWKEAARAAVDAG 177
Query: 614 IKAIAVHGRT 643
+A+A+H RT
Sbjct: 178 AQALALHPRT 187
>UniRef50_UPI0000499494 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 515
Score = 57.2 bits (132), Expect = 3e-07
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ + K+IL + G LP R + ++G D+ TE ++ + K
Sbjct: 166 LDLKGKLILPSLCTFGNLPFRKVVKRFGCDVTMTEMIMAESLVEGKT------------- 212
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCD-EARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
++ +V R E+ + L +G A+A +V V+ D ++N CP ++ K G
Sbjct: 213 -SEWALVKRDSSEDIFGIQLCVGNSMLAAKACQVLNSVDCDF--YELNCACPIDYVYKKG 269
Query: 461 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLE-LVNKLVSSGIKAIAVHG 637
MG L+ +P + +L + PV K+R K+ + L+ G +++HG
Sbjct: 270 MGAQLIERPKRIESLLHAMRSVTERPVAIKVRTGKSSNTIQDVLLPNCADYGAAMVSIHG 329
Query: 638 RTK 646
RT+
Sbjct: 330 RTR 332
>UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7;
Chlamydiaceae|Rep: Predicted oxidoreductase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 335
Score = 57.2 bits (132), Expect = 3e-07
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 3/185 (1%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ + I+ AP+ P R ++ Y +++ E + L + R + +L DY
Sbjct: 9 NILLRSSIVYAPLAGFSDYPYRCMSALYQPGLMFCEMVKVEGILYAPERTSKLL---DY- 64
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKG 457
E + + QL + + + AK++E ID+N GCP + K
Sbjct: 65 ------------NENMRPIGAQLCGSNPETSGEAAKILEGLGFDLIDLNCGCPTDKITKD 112
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAV 631
G G LL P+ +IL +++++SIPVT KIR E + V + +G A+ V
Sbjct: 113 GSGSGLLKTPELIGRILDKIINSVSIPVTVKIRSGWDMEHINVEDTVRIIRDAGASAVFV 172
Query: 632 HGRTK 646
HGRT+
Sbjct: 173 HGRTR 177
>UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Thermus
thermophilus|Rep: TRNA-dihydrouridine synthase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 342
Score = 57.2 bits (132), Expect = 3e-07
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Frame = +2
Query: 323 EKKKVVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 499
E+ + LQL D + A++ E I++N+GCP E + +GG G LL +
Sbjct: 56 EEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVR 115
Query: 500 QILKTLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGRT 643
+ILK + + + +PVT K+R+ +T + V + +G+K VH R+
Sbjct: 116 EILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARS 167
>UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 347
Score = 57.2 bits (132), Expect = 3e-07
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 5/181 (2%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E ++APM + R++ + GA++ Y+E + + + Y
Sbjct: 16 EQPFLMAPMAGVTDPAYRIMCRRRGANLAYSEMVS--------------VAGLAYASNKT 61
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH---DVAAIDINMGCPKEFSIKGGM 463
+V +EE++ V G+ E A VA + E ++ IDINM CP + G
Sbjct: 62 WRLVL-PADEEQQICVQLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGE 120
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAVHG 637
G AL+ PD A +I++ V +PVT KIR L +G A+AVHG
Sbjct: 121 GSALMRTPDLAEKIVEAAVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHG 180
Query: 638 R 640
R
Sbjct: 181 R 181
>UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5;
Alteromonadales|Rep: TRNA-dihydrouridine synthase C -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 326
Score = 56.8 bits (131), Expect = 4e-07
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG A A K + ID+N GCP + K G LL P+ Y+I+K + D
Sbjct: 70 LGQVAGALAENAVKAISLGSHGIDLNFGCPAKTVNKSKGGAVLLKDPEHMYEIIKAVRDA 129
Query: 527 LSI--PVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ V+ KIR+ + E+V+ +VS+G +IA+H RTK
Sbjct: 130 VDSKHQVSAKIRLGFDDDSNSQEIVDAVVSAGASSIAIHARTK 172
>UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 374
Score = 56.4 bits (130), Expect = 6e-07
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 7/181 (3%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
++ A + LPMR++A ++ A E ++D +FL S + + +D D
Sbjct: 40 VVQAALSGYSDLPMRVIARRHSASYTICEVMLD-QFLLSLTKREKTRHFLDIAD------ 92
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
EE +G E + KLVE ID+N GCP + + G LS
Sbjct: 93 ------EEHPVGGQLMGAEPEQFSAGALKLVEAGFDVIDVNFGCPVKKVLGRCRGGFHLS 146
Query: 482 KPDKAYQILKTLVDNL--SIPVTCKIR--ILKTPEAT---LELVNKLVSSGIKAIAVHGR 640
+P A +IL+ D + IPVT K+R + TPE+ E+++ + +G+ + VHGR
Sbjct: 147 QPAVAIEILRRTRDVVPDHIPVTVKMRRGMDDTPESREQFFEILDGAIDAGLAGVTVHGR 206
Query: 641 T 643
T
Sbjct: 207 T 207
>UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4;
Leptospira|Rep: TRNA-dihydrouridine synthase -
Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197)
Length = 339
Score = 56.0 bits (129), Expect = 7e-07
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Frame = +2
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDV--AAIDINMGCPKEFSIKGGMGVALL 478
F + E+ + +QLG D +AL + + D + I++N+GCP + +G G L+
Sbjct: 58 FLSYSPEELPLAIQLGG-DNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLM 116
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLV----SSGIKAIAVHGR 640
P++ +++ + N+SIPVT K RI + + TLE + + + +G++ VH R
Sbjct: 117 ETPERVAELVCAMDGNVSIPVTVKCRIGISGKETLEDLCRFIECVRQAGVRRFIVHAR 174
>UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 342
Score = 56.0 bits (129), Expect = 7e-07
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Frame = +2
Query: 131 APMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFR 310
APMVR L R +YG D+ +T ++ +F RS D+ T
Sbjct: 35 APMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSV-----FARDSDFTTSPTST---- 85
Query: 311 TCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 490
+ Q G C + L+ + IDIN GCP+ ++ +G AL+ K +
Sbjct: 86 -------PTIAQFGVCSPLEISRSTTLIAPYINGIDINCGCPQSWACACSIGAALMHKRE 138
Query: 491 KAYQILKTLVDNL-------SIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++K L V+ KIRI + T++ + + +G+ I +HGR +
Sbjct: 139 LVAEMVKEAKSALKREGYEGKKTVSVKIRIHRDLRDTVDFIKTVQDAGVDFITIHGRMR 197
>UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_38_15456_16676 - Giardia lamblia
ATCC 50803
Length = 406
Score = 55.6 bits (128), Expect = 1e-06
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Frame = +2
Query: 329 KKVVLQLGTCDEARALKVAKLVEHD------VAAIDINMGCPKEFSIKGGMGVALLSKPD 490
+K++LQL + + A+L+ HD + A+DIN+GCP + G G +
Sbjct: 113 EKIILQLCGNNPSTFRAAAELL-HDSPIASQLVALDINLGCPASCASSKGYGFYVAQNWP 171
Query: 491 KAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
+QI+ PVTCKIR L + E T++ + LV SG I +H R
Sbjct: 172 LVHQIISETSSARLFPVTCKIRPLNSIEKTIDYMVLLVMSGASGITIHMR 221
>UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231;
Bacteria|Rep: tRNA-dihydrouridine synthase A - Shigella
flexneri
Length = 330
Score = 55.6 bits (128), Expect = 1e-06
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Frame = +2
Query: 212 LIDWKFLRSKRRFNDIL--NTVDYVDQ-TDGTIV-----FRTCEEEKKKVVLQLGTCDEA 367
++DW R R F +L NT+ Y + T G I+ + EE+ V LQLG D A
Sbjct: 18 MLDWTD-RHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPA 76
Query: 368 RALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVT 544
+ AKL E I++N+GCP + G G L+ +K + D +SIPVT
Sbjct: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136
Query: 545 CKIRI 559
K RI
Sbjct: 137 VKTRI 141
>UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 297
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +2
Query: 377 KVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKI 553
+ AK++E +D+N GCP + K G G LL P+ +I+ +V + IPVT KI
Sbjct: 41 QAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKI 100
Query: 554 RI-LKTPEATLELVNKLV-SSGIKAIAVHGRTK 646
R + +E + ++V +G +AI +HGRT+
Sbjct: 101 RAGWDEQQIQVENIVQIVEQAGAQAICIHGRTR 133
>UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase;
n=9; Epsilonproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Helicobacter pylori
(Campylobacter pylori)
Length = 328
Score = 55.2 bits (127), Expect = 1e-06
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Frame = +2
Query: 104 MNYENK--IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDY 277
M+++NK + LAP+ LP R + K+G D+ +E + + + + + +L
Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60
Query: 278 VDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKG 457
D I K+ VV + A++ +EH V ID N GCP
Sbjct: 61 EDHFMAQI-----SGSKESVVKE--------AVEKINALEH-VNGIDFNCGCPAPKVANH 106
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVT-CKIRILKTPEATLELVNKLVSSGIKAIAVH 634
G G LL + ++LKT+ +N S +T K+R+ + E+ + L + + + VH
Sbjct: 107 GNGSGLLKDLNHLVKLLKTIRENTSKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVH 166
Query: 635 GRTK 646
GRT+
Sbjct: 167 GRTR 170
>UniRef50_UPI0000DAE45A Cluster: hypothetical protein
Rgryl_01000346; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000346 - Rickettsiella
grylli
Length = 330
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 311 TCEEEKKKVVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
T + +K + +QLG + K AK+VE + + I++N+GCP E GG GV LL +P
Sbjct: 59 TVDANEKALAIQLGGGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEP 118
Query: 488 DKAYQILKTLVDNLSIPVTCKIRI 559
++ + + + +PVT K RI
Sbjct: 119 NRVADAIAAMKAVVRLPVTVKTRI 142
>UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;
n=3; Desulfovibrio|Rep: Dihydrouridine synthase family
protein - Desulfovibrio desulfuricans (strain G20)
Length = 376
Score = 54.8 bits (126), Expect = 2e-06
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDINMGCPKEFSIKGGMGVALL 478
VF EE +V QL D A+ VE + +DINMGC +K G G LL
Sbjct: 105 VFSWRPEELPALVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLL 164
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGR 640
P++A +++ + +S+PV K+R PE + L +L +G A+ H R
Sbjct: 165 RDPERAVRMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPR 220
>UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Opitutaceae bacterium TAV2|Rep: Putative TIM-barrel
protein, nifR3 family - Opitutaceae bacterium TAV2
Length = 389
Score = 54.8 bits (126), Expect = 2e-06
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Frame = +2
Query: 116 NKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
+ + L+P+ LPMRL + G + W D++N ++++ G
Sbjct: 10 SNLFLSPLAGYTNLPMRLTVRELGG--------LGWAT-------TDLVNARSLIERSKG 54
Query: 296 TI-VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
+ + T ++ + G+ E E ++D+NMGCP + + G G A
Sbjct: 55 AMKLVETAPGDQPLAIQLFGSVPEEMRDAAVICKELGAQSVDVNMGCPVKKVVGIGGGAA 114
Query: 473 LLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATL---ELVNKLVSSGIKAIAVHG 637
++++ +K +++ +V+ + IPVT K+R L +A + +L L G+ AI VHG
Sbjct: 115 MMTELNKTAALVRGMVEAVGNKIPVTAKMR-LGWDDANITAPDLARVLADVGVAAIFVHG 173
Query: 638 RTK 646
RT+
Sbjct: 174 RTR 176
>UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel
protein; n=5; Alphaproteobacteria|Rep: Dihydrouridine
synthase TIM-barrel protein - Parvularcula bermudensis
HTCC2503
Length = 368
Score = 54.8 bits (126), Expect = 2e-06
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E +ILAPM I LP R AL+ GA +V +E + +++R ++ D
Sbjct: 27 ERPVILAPMSGITDLPFRRAALRAGAPLVVSEMVASEEWVR---------------ERPD 71
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALK--VAKLVEHDVAAIDINMGCPKEFSIKGGM- 463
+ + V+ G EAR ++ AK IDINMGCP + G +
Sbjct: 72 VALRAALPTGDSLNVIQLAGR--EARWMREGAAKAEALGADIIDINMGCPAR-KVTGLLS 128
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRI------LKTPEATLELVNKLVSSGIKAI 625
G AL+ D A ++K + S PVT K+R+ L P E+ +G+ I
Sbjct: 129 GSALMRDVDHALSLIKATLSGTSRPVTLKMRLGWDHGHLNAP----EIAKGAADAGVAVI 184
Query: 626 AVHGRTK 646
VHGRT+
Sbjct: 185 TVHGRTR 191
>UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;
Caulobacter|Rep: Nitrogen regulation protein Nifr3 -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 315
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +2
Query: 413 IDINMGCP-KEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEA--TL 583
ID+N GCP KE + G AL+ +PD A ++ V+ + +PVT K+R+ +
Sbjct: 78 IDLNFGCPAKEVAAGAACGSALMREPDLAEALVAAAVEAVDVPVTVKMRLGWDIDCLNAP 137
Query: 584 ELVNKLVSSGIKAIAVHGRTK 646
++ + ++G KA+ VHGRT+
Sbjct: 138 DIARRAEAAGAKAVTVHGRTR 158
>UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=5; Chloroflexi (class)|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Chloroflexus
aurantiacus J-10-fl
Length = 407
Score = 54.4 bits (125), Expect = 2e-06
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +2
Query: 323 EKKKVVLQLGTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPDKAY 499
E++ + +Q+ D A++VE A IDIN GCP GG G ALL K
Sbjct: 137 EERPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKME 196
Query: 500 QILKTLVDNLSIPVTCKIRILKTPEAT--LELVNKLVSSGIKAIAVHGRTK 646
++L+ + + + IPVT K R ++ +E + ++G+ A+A+H RT+
Sbjct: 197 RLLRAVREAVQIPVTLKFRAGWDEQSLNFIEAGKRAEAAGVSALALHPRTR 247
>UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 4,
putative - Trypanosoma brucei
Length = 419
Score = 54.4 bits (125), Expect = 2e-06
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 4/177 (2%)
Frame = +2
Query: 125 ILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIV 304
I APMVR R L +G DI YT ++ F S+ Q + +I
Sbjct: 62 IQAPMVRCSRPAFRKLCRLWGTDISYTHMIMADSFACSEA-----------ARQAEFSIY 110
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSK 484
+ +++ QL + A A +V AID+N GCP+ + G+G ALL
Sbjct: 111 -----SGETRLITQLASSSGPTAATAAAIVAPWCDAIDLNCGCPQRRVMADGLGAALLRN 165
Query: 485 P----DKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
P D + L + +P K+R+ +++ + ++G I VHGRT
Sbjct: 166 PEVVADTVRCVRNALEGGVELPCVVKMRVKDDVRLSVDFARQCEAAGAAWITVHGRT 222
>UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Anaeromyxobacter|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 352
Score = 54.0 bits (124), Expect = 3e-06
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 2/181 (1%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ + LAP+ + P R + + GA YTE + + + L T Y+D+
Sbjct: 8 FPGRYFLAPLAGVSDRPFRAICRRMGASFAYTE------MVSAHGLMHGALQTSSYLDRE 61
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
F + VL AR VA V+ ID+NM CP + G G
Sbjct: 62 PDEDPFAVQIFASEPDVL-------ARGAVVA--VQAGAGMIDVNMACPVKKVCGSGAGA 112
Query: 470 ALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEAT-LELVNKLVSSGIKAIAVHGRT 643
A+ P K + ++ + + +PVT KIR E +++ + G A+A+HGRT
Sbjct: 113 AMGRDPRKVEEAVRAIRAAVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRT 172
Query: 644 K 646
+
Sbjct: 173 R 173
>UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 364
Score = 53.2 bits (122), Expect = 5e-06
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Frame = +2
Query: 320 EEKKKVVLQLGTCDEARALKVAKLV--EHDVAAIDINMGCP-KEFSIKGGMGVALLSKPD 490
+E + + +Q+ D KV + + E+ V+ +DIN GCP ++ + K G LL +P+
Sbjct: 85 DEPRPLAVQIWDNDPETMAKVGRRLAEEYRVSVVDINFGCPVRQVTEKAHSGSYLLREPN 144
Query: 491 KAYQILKTLVDNLS-IPVTCKIRILKTPE--ATLELVNKLVSSGIKAIAVHGRT 643
+ + I+ LV + PVT KIR+ + E E+ + +G A+ VHGRT
Sbjct: 145 RMHAIISRLVQVCAPTPVTAKIRLGCSRENINCNEIARVVEEAGAAALTVHGRT 198
>UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21;
Cyanobacteria|Rep: TRNA-dihydrouridine synthase A -
Synechococcus sp. (strain RCC307)
Length = 335
Score = 53.2 bits (122), Expect = 5e-06
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Frame = +2
Query: 326 KKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQ 502
+K + LQLG D A + A+L E I++N+GCP KG G L+++P + +
Sbjct: 67 EKPIALQLGGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVAR 126
Query: 503 ILKTLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGR 640
++ + +PVT K RI + + L+ V+ + ++G + AVH R
Sbjct: 127 CVEAMGAACRLPVTVKHRIGIDERDSYDELLDFVDTVAAAGCQRFAVHAR 176
>UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;
n=2; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 725
Score = 53.2 bits (122), Expect = 5e-06
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+N+E LAP+ +G LP R L + YGA I +E + + Y
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLV--------------YGA 399
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA------IDINMGCPKEF 445
+ + +V R E +K +Q+ R + A+++ + + +D+NMGCP +
Sbjct: 400 KEEWALVRR--HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDL 457
Query: 446 SIKGGMGVALLSKPDKAYQILKTLVDNL-SIPVTCKIR--ILKTPEATLELVNKLVSS-G 613
G G AL+ P + ++L + L IP+T K R + +L+ + V+ G
Sbjct: 458 VFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWG 517
Query: 614 IKAIAVHGRTK 646
A+ +HGR++
Sbjct: 518 AGALTIHGRSR 528
>UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1;
Saccharophagus degradans 2-40|Rep: Dihydrouridine
synthase, DuS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 318
Score = 52.8 bits (121), Expect = 7e-06
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 4/180 (2%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMR-LLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDG 295
+I LAPM + MR +++ G DI TE + + + F +D +T
Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 475
C V LG+ A A A+ E AID+N GCP + + G L
Sbjct: 62 LYRGAHCPVR----VQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACL 117
Query: 476 LSKPDKAYQILKTL--VDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
L + D + I+ + S PVT KIR+ ++ L + ++G + VH R+K
Sbjct: 118 LDETDTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELCVHARSK 177
>UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 321
Score = 52.8 bits (121), Expect = 7e-06
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGA-DIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD- 292
++ LAPM + + MR L + G D TE L L +R F I D+ +T
Sbjct: 2 QLSLAPMEGLVDVHMRTLLTRGGYFDYCVTEFLRVTTQLLPERSFRRICPESDHQWKTPA 61
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
GT V + LG+ A A + E ++IN GCP F + G G A
Sbjct: 62 GTPVH----------LQLLGSDPVAMAENACRAAELGAPVVNINFGCPSRF-VNGRCGGA 110
Query: 473 -LLSKPDKAYQILKTLVDNL--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGR 640
LL PD+ + IL+++ L +P+T K+R+ K L + S+G++ I +H R
Sbjct: 111 YLLQFPDQIHTILESVRKALPEHVPLTAKMRLGFKDDALALANAQAMESAGVRDICIHAR 170
Query: 641 TK 646
TK
Sbjct: 171 TK 172
>UniRef50_Q7R684 Cluster: GLP_574_116690_118078; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_116690_118078 - Giardia
lamblia ATCC 50803
Length = 462
Score = 52.8 bits (121), Expect = 7e-06
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Frame = +2
Query: 86 LQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILN 265
+Q+P ILAPMVR +R LA GA VYT ++ LR D+ N
Sbjct: 1 MQWPSPSTLYTGPILAPMVRASFPGIRALAAALGASAVYTGAIVG-DSLRDVVTEVDLSN 59
Query: 266 TVDYVDQTDGTIVFRTCE---------------EEKKKVVLQLGTCDEARALKVAKLVEH 400
+ + T + +C E +V+QL + K+ ++
Sbjct: 60 MIAKISTTRRSAGSPSCVIISVPIQATETPGQFEPAIPLVVQLTVNEYDDVDKICSILAP 119
Query: 401 DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY-QILKTLVD-----NLSIPVTCKIRIL 562
ID+N+GC +F++ GG G L+ K + + LK L I + K R+L
Sbjct: 120 WCVGIDLNLGCGAQFAVSGGRGQRLVDKAENVIARFLKALQQIEDSGGRRISFSIKQRLL 179
Query: 563 KTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ E T+ + G+ IAVH R K
Sbjct: 180 GSVEETVNKMCAFYKLGVNCIAVHMRRK 207
>UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1;
uncultured Acidobacteria bacterium|Rep: Putative
uncharacterized protein - uncultured Acidobacteria
bacterium
Length = 355
Score = 52.4 bits (120), Expect = 9e-06
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 3/176 (1%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
+APM + LP R L ++ GA I +E + + L+ KR ++ ++
Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARR-LKQKRN-------------SEFALIR 46
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
R E V L DE A A + +DIN GCP ++ + G+G ++ +P
Sbjct: 47 RFPGEPCFGVQLAGNKPDET-AWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQP 105
Query: 488 DKAYQILKTLVDNL-SIPVTCKIRILKTPEAT--LELVNKLVSSGIKAIAVHGRTK 646
+ ++++ + ++ +IPVT KIR+ + L+ V G A+ VHGRT+
Sbjct: 106 QRMRRLVEAIKGSVTNIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTR 161
>UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 608
Score = 52.4 bits (120), Expect = 9e-06
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++++K+ LAP+ +G LP R + GADI E + L+
Sbjct: 243 IDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGL-------------- 288
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKG 457
++ ++ R E+ V + G D + +L+E DV IDINMGCP + +
Sbjct: 289 PSEWALLRRHKSEDIFGVQICGGYPDSVT--RCCQLLEDTIDVDFIDINMGCPIDSVCQK 346
Query: 458 GMGVALLSKPDKAYQILKTLVDNL-SIPVTCKIRILKTPEATL--ELVNKLVSSGIKAIA 628
G G +L KP K +++ L +T K R+ T ++ + K+ G A+
Sbjct: 347 GYGSMMLEKPKKMETVIRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMT 406
Query: 629 VHGRTK 646
+HGRT+
Sbjct: 407 LHGRTR 412
>UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4;
Bifidobacterium|Rep: Possible NifR3-like protein -
Bifidobacterium longum
Length = 414
Score = 52.0 bits (119), Expect = 1e-05
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Frame = +2
Query: 101 NMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
N+ ++L+PM + P R++ +YG D +Y E+I + L +
Sbjct: 42 NITVPTPVVLSPMAGVTNWPFRVICEEYGPDGLYVAEMITARALVAHN------------ 89
Query: 281 DQTDGTIVFRTCEEEKKKVV--LQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFS 448
R C K + + LQL + + + AK+V A +D+N GCP
Sbjct: 90 -----PKALRLCHFAKSEKIRSLQLYGVNPSITEQAAKIVVDGNMADHVDLNFGCPVPKV 144
Query: 449 IKGGMGVALLSKPDKAYQILKTLV---DNLSIPVTCKIR--ILKTPEATLELVNKLVSSG 613
+ G G AL K D ++L+ +V + IPVT KIR I E LE + G
Sbjct: 145 TRRGGGSALPWKTDIFTELLQRVVAVCEPAGIPVTAKIRVGIDHNHETFLEAGHIAQEEG 204
Query: 614 IKAIAVHGRT 643
KA+ +H RT
Sbjct: 205 CKAVTLHART 214
>UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 348
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Frame = +2
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALLS 481
F +E+ V LQLG D + + ++ ++ I++N+GCP + +G +G L++
Sbjct: 78 FLDFNDEEHPVALQLGGSDPQQLAQATRIAGDYGYDEINLNVGCPSDRVQQGKIGAILMA 137
Query: 482 KPDKAYQILKTLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGR 640
+P+ + ++ + +++PVT K RI + V+++ +SG ++ +H R
Sbjct: 138 EPELVARCVEAMQAEVTVPVTVKTRIGIDDQDDYDFLYRFVDRMEASGCTSLTIHAR 194
>UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;
Trichomonas vaginalis G3|Rep: Dihydrouridine synthase,
putative - Trichomonas vaginalis G3
Length = 318
Score = 52.0 bits (119), Expect = 1e-05
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 10/188 (5%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
E I LAPM I L R+L +G + +T L ++ + N NT
Sbjct: 17 EKPICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNT-------- 68
Query: 293 GTIVFRTCEEEKKKVVLQLGTC-DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
C E+ + G+ D+ + AK + +D+N+GC ++ + + G
Sbjct: 69 -------CPEDHPLIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGY 121
Query: 470 ALL---SKPDKAYQILKTLVDNLSIPVTCKIRIL------KTPEATLELVNKLVSSGIKA 622
++ K +K ++ + L ++ P+ KIRI + + T++ KL +G+
Sbjct: 122 FMVDNCQKREKTLELFRRLCKEVNCPICAKIRIFIDDSGEVSEKITIDFAKKLEEAGVSL 181
Query: 623 IAVHGRTK 646
+ VHGR +
Sbjct: 182 LQVHGRAE 189
>UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus3 - Schizosaccharomyces pombe (Fission
yeast)
Length = 617
Score = 52.0 bits (119), Expect = 1e-05
Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 8/189 (4%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ ++ ILAP+ +G P R L GAD Y+E + + ++ + ++ ++Y
Sbjct: 235 IDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYER 294
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD---VAAIDINMGCPKEFSIK 454
+ + R + + +QL T +A K A+++ V +D+N GCP + +
Sbjct: 295 E-----MMR--GGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFR 347
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLS--IPVTCKIRILKTPE--ATLELVNKLVS-SGIK 619
G G +LL P + + L+ + D +S IPVT K+R+ + L+ ++ + +
Sbjct: 348 QGAGSSLLENPGRLLRNLQGM-DAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTS 406
Query: 620 AIAVHGRTK 646
A +HGR++
Sbjct: 407 AATLHGRSR 415
>UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4;
Neisseria|Rep: tRNA-dihydrouridine synthase C -
Neisseria meningitidis serogroup A
Length = 333
Score = 52.0 bits (119), Expect = 1e-05
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 4/182 (2%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQ-T 289
+ +IILAPM + MR L + G +E + +F+R + + YV +
Sbjct: 12 KTRIILAPMQGLVDDVMRDLLTRIGG----YDECVS-EFVRITHTVHSRATWLKYVPEIA 66
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
+G F V LG+ + A + V ID+N GCP + G
Sbjct: 67 NGNKTF----SGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGA 122
Query: 470 ALLSKPDKAYQILKTLVDNL--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGR 640
LL +P+ + I+KTL + L IP+T K+R+ + LE + G + VH R
Sbjct: 123 ILLKEPELIFHIVKTLRERLPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHAR 182
Query: 641 TK 646
TK
Sbjct: 183 TK 184
>UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Dihydrouridine
synthase family protein - Lentisphaera araneosa HTCC2155
Length = 334
Score = 51.6 bits (118), Expect = 2e-05
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +2
Query: 317 EEEKKKVVLQL-GTCDEARALKVAKLVEHDVA-AIDINMGCPKEFSIKGGMGVALLSKPD 490
+E+ K+V Q+ G + + ++K V+ +V +DINMGCP +K G AL++ P+
Sbjct: 76 KEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALINTPE 135
Query: 491 KAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
A +++ +PV+ K R T T E + L+ AI +HGRT+
Sbjct: 136 IAKELVLAAKAATKLPVSVKTRTGITAHKTEEWMTHLLEVEPAAIILHGRTQ 187
>UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1;
Tetrahymena thermophila SB210|Rep: TIM-barrel protein,
yjbN family - Tetrahymena thermophila SB210
Length = 480
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 511
VV+QLG D K AK+ E +++N+GCP + G G L+ +P+ +I++
Sbjct: 160 VVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVAEIMR 219
Query: 512 TLVDNLSIPVTCKIRI 559
+ + SIPVT K R+
Sbjct: 220 KMKEACSIPVTVKCRL 235
>UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 307
Score = 51.2 bits (117), Expect = 2e-05
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +2
Query: 356 CDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL-S 532
C E A ++ D+ IDINMGCP G G L+ DKA ++ + +V
Sbjct: 62 CMEEAAAIAGEVSGADI--IDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGE 119
Query: 533 IPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
PVT K R+ K +E + ++G+ A+AVHGRT+
Sbjct: 120 RPVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTR 159
>UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1174
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 500 QILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++ TL L +PVT KIRIL T E TL+ ++S+G + VHGRT+
Sbjct: 783 ELINTLHKELDVPVTAKIRILDTREKTLDYAKMVISAGASILTVHGRTR 831
>UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase;
n=1; Aquifex aeolicus|Rep: Probable tRNA-dihydrouridine
synthase - Aquifex aeolicus
Length = 316
Score = 50.8 bits (116), Expect = 3e-05
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Frame = +2
Query: 104 MNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
MN++ ++ILAPM R L + GAD YTE + LR N I + Y
Sbjct: 1 MNFKKGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLR-----NGIPMKLAYF 55
Query: 281 DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGG 460
+ + I + +++ ++ +AK ++ D IDIN GC ++
Sbjct: 56 TEEERPIHIQVFGSNPEEIA--------QASVVIAKELKPDF--IDINFGCSVPKVLRNK 105
Query: 461 MGVALLSKPDKAYQILKTLVDNLS---IPVTCKIRILKTPEATLELVNKLVSSGIKAIAV 631
+L P +++K V+ L IPV+ KIR+ + +V +L +G+ IA+
Sbjct: 106 AAGYMLQCPPLMGEVVKETVEALKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAI 165
Query: 632 HGRT 643
H RT
Sbjct: 166 HART 169
>UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1;
Propionibacterium acnes|Rep: TIM-barrel enzyme, NifR3
family - Propionibacterium acnes
Length = 411
Score = 50.0 bits (114), Expect = 5e-05
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 8/188 (4%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
++ + ++LAPM + R L + GA + Y E+I + L + D
Sbjct: 46 VSVDTPVVLAPMAGVTNAAFRQLCAEQGAGL-YVCEMITSRGLV----YGD--------H 92
Query: 284 QTDGTIVFRTCEEEKKKVVLQL--GTCDEARALKVAKLVEHDVAAIDINMGCP-KEFSIK 454
+T G + F CE+ + + + G EA ++ K + V +D+N GCP + + K
Sbjct: 93 KTHGMLAFAECEDVRSVQLYGVDPGMVGEATSILCEK---YGVNHVDLNFGCPVPKVTRK 149
Query: 455 GGMGVALLSKPDKAYQILKTLV---DNLSIPVTCKIRILKTPE--ATLELVNKLVSSGIK 619
GG GV L K D+ ++ V D +PVT K RI PE ++ V SG
Sbjct: 150 GGGGV-LPWKLDRFAAVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYIDSARAAVDSGAA 208
Query: 620 AIAVHGRT 643
A+ +H RT
Sbjct: 209 AVCLHART 216
>UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aedes
aegypti|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 578
Score = 50.0 bits (114), Expect = 5e-05
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 6/187 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+N+++K+ L+P+ +G LP R + +YG DI E + + +
Sbjct: 225 INFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWALTKR----H 280
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGG 460
++ + C +K V + A +V + EH DV +D+N+GCP + G
Sbjct: 281 PSEDLFGVQICGHNQKLV---------SYATQV--IAEHADVDFVDLNLGCPIDLIFNQG 329
Query: 461 MGVALLSKPDKAYQILKT----LVD-NLSIPVTCKIRILKTPEATLELVNKLVSSGIKAI 625
G ALL + + ++++ L D + V ++ I ELV K G +
Sbjct: 330 GGSALLRRRNILEVMIQSCSRILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLV 389
Query: 626 AVHGRTK 646
+HGRTK
Sbjct: 390 TIHGRTK 396
>UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;
n=1; Bdellovibrio bacteriovorus|Rep: Dihydrouridine
synthase family protein - Bdellovibrio bacteriovorus
Length = 323
Score = 49.6 bits (113), Expect = 6e-05
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG E AL + V+ +D+N GCP + + G +LL D+ + I+ T+
Sbjct: 70 LGGQAEPLALNAQRAVKLGALGVDLNFGCPAKTVNRHDGGASLLKSCDRVFNIVDTVRKA 129
Query: 527 L--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ +PVT KIR+ P LE+ + + + VH RTK
Sbjct: 130 VPADVPVTAKIRLGFDDPTKCLEIAQAVEEANATWLTVHCRTK 172
>UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN
family; n=4; Legionella pneumophila|Rep: Zinc binding
TIM barrel protein, YjbN family - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 334
Score = 49.6 bits (113), Expect = 6e-05
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Frame = +2
Query: 248 FNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDIN 424
+ ++ T + D + F + E + +QLG D++ +K A + E I++N
Sbjct: 40 YTEMQTTGAVQNNPDRALYFNSVEHP---LAIQLGGADKSALVKCAIIAEQKGFNEINLN 96
Query: 425 MGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNK-- 598
+GCP + G G L+ +P+ ++ + + IPVT K RI + + E
Sbjct: 97 LGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQVVGIPVTAKTRIGIDNQDSYEFFRSFS 156
Query: 599 --LVSSGIKAIAVHGR 640
LV +G + +H R
Sbjct: 157 LHLVEAGCDKLIIHAR 172
>UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2;
Betaproteobacteria|Rep: Dihydrouridine synthase, DuS -
Dechloromonas aromatica (strain RCB)
Length = 319
Score = 49.6 bits (113), Expect = 6e-05
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--V 520
LG+ A +LV + A +D+N GCP + G ALL +P+ +I + V
Sbjct: 71 LGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNEITSAVRSV 130
Query: 521 DNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
IP T K+R+ + ++ L ++GI + VHGRT+
Sbjct: 131 VPAHIPFTAKMRLGIDDTSRAIDCAQALEAAGINELIVHGRTR 173
>UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
tRNA-dihydrouridine synthase - Hyphomonas neptunium
(strain ATCC 15444)
Length = 345
Score = 49.6 bits (113), Expect = 6e-05
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 6/187 (3%)
Frame = +2
Query: 104 MNYEN-KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYV 280
+N+E ++ LAPM PMR A+ +GA V +E ++ + L R
Sbjct: 16 INFEAPRVWLAPMSGATDAPMRRQAVHFGAPAVVSE-MVAGEMLAKAR------------ 62
Query: 281 DQTDGTIVFRTCEEEKKKV-VLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIK 454
+V RTC E ++QL L A L+ E V IDINMGCP +
Sbjct: 63 ----ADVVRRTCRHEGAGYWIVQLAARRPEDMLAGAVLMAEAGVDVIDINMGCPSKQVTG 118
Query: 455 GGMGVALLSKPDKAYQILKTLVDNLS-IPVTCKIRILKTPE--ATLELVNKLVSSGIKAI 625
G G AL+ A +I+ + + PVT K+R+ E EL G++ +
Sbjct: 119 GQSGSALMRDLPLAGEIIDAALQGAAGRPVTLKMRLGWDDENLNAPELAVMAQDRGVQML 178
Query: 626 AVHGRTK 646
VHGRT+
Sbjct: 179 TVHGRTR 185
>UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1;
Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)|Rep: TIM-barrel protein, yjbN family - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 322
Score = 49.6 bits (113), Expect = 6e-05
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +2
Query: 305 FRTCEEEKKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLS 481
F CE +VLQLG + + AK+ + I+IN+GCP GV L+
Sbjct: 54 FNVCEHP---LVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQ 110
Query: 482 KPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVN---KLVSSGIKAIAVHGR 640
P Q + + + +P+T K RI + ++ ELVN + SSG + +H R
Sbjct: 111 TPQVVAQCVDAMRQMVDVPITVKSRIGVDNMDSYDELVNFVATVESSGCDNLVIHAR 167
>UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5;
Bacteria|Rep: Transcriptional regulator - Anabaena sp.
(strain PCC 7120)
Length = 349
Score = 49.2 bits (112), Expect = 8e-05
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +2
Query: 386 KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLS-IPVTCKIRI- 559
+L +++A +D+NMGCP + +G LL P K QIL+ L ++ P+T K+R+
Sbjct: 101 ELCGYNIAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEELRQAVNDRPLTVKMRVG 160
Query: 560 LKTPEATLELVNKLVSSGIKAIAVHGRT 643
+ + E+++ + I +++HGRT
Sbjct: 161 FENTDTFYEILDIVNRHNIDLLSLHGRT 188
>UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase;
n=5; Moraxellaceae|Rep: Possible tRNA-dihydrouridine
synthase - Psychrobacter arcticum
Length = 350
Score = 49.2 bits (112), Expect = 8e-05
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG+ + A A E AIDIN GCP + G LL +P+ Y I+ +
Sbjct: 105 LGSEAQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEVMYDIISAVRQA 164
Query: 527 L--SIPVTCKIRILKTPEATL-ELVNKLVSSGIKAIAVHGRTK 646
+ +IPV+ KIR+ T + + ++ + +SG + +H RTK
Sbjct: 165 VPANIPVSAKIRLGYTDTSRMDDIRGAIAASGADWLTIHARTK 207
>UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domains
plus Dus1p tRNA dihydrouridine synthase Tim barrel; n=2;
Cryptosporidium|Rep: Ylr401cp-like protein with 2 CCCH
domains plus Dus1p tRNA dihydrouridine synthase Tim
barrel - Cryptosporidium parvum Iowa II
Length = 707
Score = 49.2 bits (112), Expect = 8e-05
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ NK+ILAP+ +G LP R L LK+GAD+ +E ++ N+IL+ +
Sbjct: 314 FRNKLILAPLTTVGNLPFRRLCLKFGADVTVSEMVL----------CNEILS-----GKA 358
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLV-EH-DVAAIDINMGCPKEFSIKGGM 463
+ + EE K +QL +++ +K + + EH + IDIN CP + G
Sbjct: 359 SELALLKKSPEE-KYFGIQLAGGNKSTIIKTGEFINEHCEFDFIDINAACPLKSLHDKGA 417
Query: 464 GVALLSKPDKAYQILKTLVDNLSIP-VTCKIRI 559
G L+ + + ++K L + VT K+R+
Sbjct: 418 GSILVDRVSELETMVKGLKKVMDGKLVTVKVRM 450
>UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;
Fusobacterium nucleatum|Rep: Nitrogen regulation protein
NIFR3 - Fusobacterium nucleatum subsp. nucleatum
Length = 307
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +2
Query: 386 KLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--VDNLSIPVTCKIR 556
K +E+ V I++N GCP + + G G AL+ +P+K +IL + V N ++ KIR
Sbjct: 74 KYIENLGVKHINLNCGCPMKKIVNCGYGAALVKEPEKIKKILSEIKSVLNNDTKLSVKIR 133
Query: 557 I-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
I K PE +++ G I VHGRT+
Sbjct: 134 IGYKEPENYIQIGKIAEELGCDHITVHGRTR 164
>UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1;
Caminibacter mediatlanticus TB-2|Rep:
tRNA-dihydrouridine synthase B - Caminibacter
mediatlanticus TB-2
Length = 311
Score = 48.8 bits (111), Expect = 1e-04
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
LAP+ LP R + ++G D+ ++E +I+ N + + ++ ++
Sbjct: 15 LAPLAGYTDLPFRSVVKEFGCDMTFSE-MIN-------------ANAIAFNNEKTKKMMQ 60
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHD--VAAIDINMGCPKEFSIKGGMGVALL- 478
++ +E +Q+ + A+K +++ + IDIN+GCP + + G G LL
Sbjct: 61 KSSKETP--YFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLK 118
Query: 479 -SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRT 643
+K +I+ ++ V+ K+R+ ++ L GIK + VHGRT
Sbjct: 119 DENKEKLKEIVSAIIKTSKKIVSAKMRLGYNEVVAVDRAKMLEDLGIKFLTVHGRT 174
>UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_87,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 346
Score = 48.8 bits (111), Expect = 1e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 511
VV QLG D + K A++ E I++N+GCP E G G L+ +P Q +K
Sbjct: 67 VVCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMK 126
Query: 512 TLVDNLSIPVTCKIRI 559
+ + + IP T K R+
Sbjct: 127 KMKEAVKIPCTLKCRL 142
>UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 278
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/103 (25%), Positives = 47/103 (45%)
Frame = +2
Query: 338 VLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL 517
+ Q G C + L+ V +DIN GCP+ ++ +G AL+ K + +++K
Sbjct: 38 IAQFGVCSPLEISRSTTLLAPYVNGVDINCGCPQSWACACSIGAALMHKRELVAEMVKEA 97
Query: 518 VDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
L KT T++ +N + +G+ I +HGR +
Sbjct: 98 KSALK---RDGFEGKKTVRETIDFINTVQDAGVDFITIHGRMR 137
>UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2;
Sinorhizobium|Rep: Dihydrouridine synthase DuS -
Sinorhizobium medicae WSM419
Length = 385
Score = 47.6 bits (108), Expect = 3e-04
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVE-HDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 511
V LQLG D + + A++ E + I++N+GCP + G G L+ +P +
Sbjct: 76 VALQLGGNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADCIA 135
Query: 512 TLVDNLSIPVTCKIRI---LKTPEATL-ELVNKLVSSGIKAIAVHGR 640
+ + IPVT K RI + PE L +LV +G + VH R
Sbjct: 136 AMKAAVEIPVTVKCRIGVDDQDPEVALRDLVKCAKDAGTDGVWVHAR 182
>UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5;
Bacteroidetes|Rep: Putative uncharacterized protein -
Polaribacter irgensii 23-P
Length = 317
Score = 47.6 bits (108), Expect = 3e-04
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +2
Query: 332 KVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 508
+V+ Q+ T D L V+K V ++ N+GCP K GMG L+S +K IL
Sbjct: 62 EVIPQIITNDAEEFLFVSKYVRALGYKELNWNLGCPYPMVTKRGMGSGLISDAEKINSIL 121
Query: 509 KTLVDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGR 640
+ + I V+ K+R+ + PE L ++ L + +K IA+H R
Sbjct: 122 HKVHNESDILVSMKMRMGYENPEEILGVLPILDTYPLKNIAIHAR 166
>UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14784,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 505
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 521 DNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ LS+P+TCKIR+ K E T+ L +G + + VHGRTK
Sbjct: 151 EKLSVPITCKIRVFKEMEKTVRYAQMLEKAGCQLLTVHGRTK 192
Score = 36.3 bits (80), Expect = 0.63
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +2
Query: 137 MVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKR-RFNDILNTVDYVDQTDGTIVFRT 313
MV L RLL+ ++GA + YT F+R R +++ N V
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEV-------------- 46
Query: 314 CEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVAL 475
CEE++ ++ Q D ++ A L + AID+N+GCP+ + +G G L
Sbjct: 47 CEEDRP-LITQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFL 99
>UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Dihydrouridine
synthase, DuS - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 340
Score = 47.2 bits (107), Expect = 3e-04
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 5/173 (2%)
Frame = +2
Query: 143 RIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEE 322
RIG PM + +++ + +DW R + L ++
Sbjct: 8 RIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACATA 67
Query: 323 EKKKVVLQL-GTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 499
V LQL G+ EA A + +D+N GCP + + G +LL +P++ +
Sbjct: 68 SGTPVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGGASLLRQPERVH 127
Query: 500 QILKTLVDNLS---IPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++ + + L+ I VT KIR+ L S G + VH RT+
Sbjct: 128 TVVRAVAEALAPLGIAVTAKIRLGFDDKHVALACAEAAESGGAAHLVVHARTR 180
>UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4;
Moraxellaceae|Rep: TIM-barrel protein, yjbN family -
Psychrobacter sp. PRwf-1
Length = 348
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +2
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVA-KLVEHDVAAIDINMGCPKEFSIKGG 460
+TD + + T E +VLQLG D + + A + + ++IN+GCP +
Sbjct: 63 KTDRLLRYDTLEHP---LVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNK 119
Query: 461 MGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKA 622
+G L+++PD +++ + ++ IPVT K RI + E + VS+ +A
Sbjct: 120 IGACLMAEPDTVAALVRNMQAHVDIPVTVKHRIGIDEHDSYEFMQDFVSASAEA 173
>UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: Dihydrouridine
synthase, DuS - Polynucleobacter sp. QLW-P1DMWA-1
Length = 347
Score = 47.2 bits (107), Expect = 3e-04
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Frame = +2
Query: 320 EEKKKVVLQLGTC---DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 490
+++ VVLQLG D AR+ ++A+ +D ID+N GCP E +G G L+++P
Sbjct: 45 QDQHPVVLQLGGSEPNDLARSAELAQQWGYD--EIDLNCGCPSERVQRGAFGACLMAEPK 102
Query: 491 KAYQILKTLVDNLSIPVTCKIRI-LKTPEA---------TLELVNKLVSSGIKAIAVHGR 640
+K + + + IP++ K R+ L + +A L+ + + +G + +H R
Sbjct: 103 LVADCVKAMQNAVDIPISVKHRLGLDSMDAANSEKDYQFALDFIMAVADAGASQVTIHAR 162
>UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 493
Score = 46.8 bits (106), Expect = 4e-04
Identities = 35/132 (26%), Positives = 61/132 (46%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTI 301
+I APMVR R + +G + YT L+ F++S +
Sbjct: 98 LIQAPMVRCSRPAFRQVCRAWGTRVSYTHMLMAESFVKSPHARH---------------A 142
Query: 302 VFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
F E E + +V QL A + A L+ ID+N GCP+ +++K G+G ALL
Sbjct: 143 EFARYEGENR-LVAQLAAKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAMKEGIGAALLD 201
Query: 482 KPDKAYQILKTL 517
+P++ +++++
Sbjct: 202 QPERVADMVRSI 213
>UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO2497;
n=5; Bacteria|Rep: Putative uncharacterized protein
SCO2497 - Streptomyces coelicolor
Length = 406
Score = 46.4 bits (105), Expect = 6e-04
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKY-GADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
++LAPM I P R L ++ G ++ E+I + L V+ ++T
Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRAL------------VERNEKTMQL 74
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKGGMGVA 472
I F E + +QL D K +++ + A ID+N GCP + G G A
Sbjct: 75 IHFDATETPRS---IQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSA 131
Query: 473 LLSKPDKAYQILKTLVDNL-SIPVTCKIRI-LKTPEAT-LELVNKLVSSGIKAIAVHGRT 643
L K I++ V +PVT K+R L T L+ V G+ AIA+HGRT
Sbjct: 132 LPYKRHLLRAIVREAVTGAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRT 191
>UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 330
Score = 46.4 bits (105), Expect = 6e-04
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Frame = +2
Query: 326 KKKVVLQLGTCDE---ARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 496
+K + LQ+G A A KV + +D I++N+GCP + K G L+ +P+
Sbjct: 56 EKPIALQIGGSSPTLLAEATKVGEDFGYD--EINLNLGCPSKKVEKNKFGACLMKEPNLV 113
Query: 497 YQILKTLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGR 640
L + +PVT K RI + E ++ L S+G+K +H R
Sbjct: 114 ADCLSKMQSVTKLPVTIKTRIGYDDTEDYENLHRFISTLKSTGVKTFIIHAR 165
>UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Shewanella sp. (strain W3-18-1)
Length = 343
Score = 46.0 bits (104), Expect = 8e-04
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 320 EEKKKVVLQLGTCDEARALKVAKLV-EHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 496
+E+ + LQLG + + AKL E +++N+GCP + G G L+++P+
Sbjct: 73 QEEHPLALQLGGSNPQDLARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELV 132
Query: 497 YQILKTLVDNLSIPVTCKIRI 559
+ + + + IPVT K RI
Sbjct: 133 AECVDAMKQVVDIPVTVKTRI 153
>UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 326
Score = 46.0 bits (104), Expect = 8e-04
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKT 514
V+ LG+ E A A+ ID+N GCP + + G G LL+ P+ ++I+ T
Sbjct: 67 VIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPELLHRIVST 126
Query: 515 L--VDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ I VT K+R+ + + L G ++ VH RT+
Sbjct: 127 VRAAVPARIAVTAKMRLGVSDTSLAIACATALAEGGAASLVVHARTR 173
>UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Pseudomonas syringae pv. tomato
Length = 317
Score = 45.6 bits (103), Expect = 0.001
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG+ A A E +D+N GCP + + G LL +P+ + I+ +
Sbjct: 70 LGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIVSQVRRA 129
Query: 527 L--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ IPVT K+R+ + + L+ L G I VH RTK
Sbjct: 130 VPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTK 172
>UniRef50_A5KKR3 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 211
Score = 45.2 bits (102), Expect = 0.001
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
L C E KL ++ I++N+GCP + + G G L+ P++ L+ + N
Sbjct: 66 LTNCAEDFVQTAKKLEQYGYKEINLNVGCPSKTVVTKGRGAGFLAFPERLDLFLEEVFQN 125
Query: 527 LSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
I ++ K RI ++ E +L++ IK + +H RT+
Sbjct: 126 CPIDISVKTRIGTESGEEFPKLMDIYNKYPIKELIIHPRTQ 166
>UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,
putative; n=7; Plasmodium|Rep: Uncharacterized protein
family UPF0034, putative - Plasmodium yoelii yoelii
Length = 531
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPK-EFSIKGGMGVALLSKPDKAYQIL 508
+V QLG D + A LVE I+IN+GCP + + KG G L+ P I+
Sbjct: 210 IVCQLGGSDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVKNIV 269
Query: 509 KTLVDNLSIPVTCKIR 556
+ + IPVT KIR
Sbjct: 270 YEIKKKVQIPVTVKIR 285
>UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG01258.1 - Gibberella zeae PH-1
Length = 362
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/118 (27%), Positives = 55/118 (46%)
Frame = +2
Query: 128 LAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 307
LAPMVR G L R KYG D+ ++ ++ +F RS + +D + F
Sbjct: 29 LAPMVRYGKLAFRQTVHKYGVDLCWSPMILAKEFNRS-----------SFARDSDWS--F 75
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLS 481
T E ++ ++Q G + + LV +D+N GCP+ ++ +G AL++
Sbjct: 76 ST-EPKQPPTIVQFGANVPLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMN 132
>UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 344
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--V 520
LG+ A A+L A ID+N GCP + G G +LL +P+ I+ +
Sbjct: 76 LGSDPACMAENAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAIVSAVRRA 135
Query: 521 DNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+PV+ K+R+ +E + G + VH RTK
Sbjct: 136 VPAGMPVSAKMRLGYNDDSRAVECALAIAEGGAGELVVHARTK 178
>UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative;
n=3; Leishmania|Rep: Dihydrouridine synthase (Dus),
putative - Leishmania major
Length = 661
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +2
Query: 410 AIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTP 571
A+D+N+GCP+ + +G G L+ + + I+ TL L +PVT KIR+ P
Sbjct: 283 AVDVNLGCPQGIARRGHYGSFLMEDWELIHTIVHTLHVELEVPVTVKIRVFDHP 336
>UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase A -
Xylella fastidiosa
Length = 340
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 326 KKKVVLQLGTCDEARALKVAKL-VEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQ 502
++ V LQLG + A K A++ V+ + I++N GCP + G G L+ +P
Sbjct: 69 EQPVALQLGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVAD 128
Query: 503 ILKTLVDNLSIPVTCKIRI 559
+ + +S+PVT K R+
Sbjct: 129 CVAAMAAVVSVPVTVKCRL 147
>UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep:
CG10463-PA - Drosophila melanogaster (Fruit fly)
Length = 604
Score = 44.4 bits (100), Expect = 0.002
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 7/188 (3%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ K++L+P+ +G LP R + ++GADI E L+ +
Sbjct: 253 VDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQPLLKGMGQ------------ 300
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTC-DEARALKVAKLVEHDVAA---IDINMGCPKEFSI 451
+ + R E+ V + C + L A V H+ A ID+N+GCP +
Sbjct: 301 --EWALTKRHQSED----VFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIY 354
Query: 452 KGGMGVALLSKP---DKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKA 622
+ G G AL+ + + + L D L V + I EL+ + G A
Sbjct: 355 QQGGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASA 414
Query: 623 IAVHGRTK 646
+ +HGR++
Sbjct: 415 VTLHGRSR 422
>UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2;
Gammaproteobacteria|Rep: NifR3/Smm1 family protein -
Reinekea sp. MED297
Length = 314
Score = 44.0 bits (99), Expect = 0.003
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG+ +A A + +E +D+N GCP + G LL++P+ Y +++++ D
Sbjct: 70 LGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIYAVVRSVRDA 129
Query: 527 L--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
L ++ K+R+ + E + + G I VH RTK
Sbjct: 130 LPGDQTLSAKMRLGFEDNSLMWECAHAIRDGGANEIIVHARTK 172
>UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2;
unclassified Gammaproteobacteria|Rep:
TRNA-dihydrouridine synthase C - Congregibacter
litoralis KT71
Length = 328
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Frame = +2
Query: 314 CEEEKKKVVLQ-LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 490
C V LQ LG A ++ E +D+N GCP + + G +L +P+
Sbjct: 64 CTSSGVPVYLQILGGDPSVVAENASRAAELGAPGVDLNFGCPAKTVNRSDGGSIILREPE 123
Query: 491 KAYQILKTLVDNL--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ ++I+ L S+P++ KIR+ + + L++V+ + ++ + +H RT+
Sbjct: 124 RVHRIVAATRQALPPSVPLSVKIRLGFDSSDRFLDIVSGIDAARPSELVIHARTR 178
>UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2;
Proteobacteria|Rep: TRNA-dihydrouridine synthase -
Ralstonia solanacearum UW551
Length = 369
Score = 44.0 bits (99), Expect = 0.003
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +2
Query: 314 CEEEKKKVVLQLGTCDEA-RALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPD 490
C +V+QL D A A+ ID+N GCP + + G G LLS P+
Sbjct: 102 CTASGTPMVIQLLGSDPVWLARNAAQAATISPHGIDLNFGCPAKVVNRHGGGAMLLSTPE 161
Query: 491 KAYQILKTL--VDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ I+ + +I VT K+R+ + ++ L G ++ VH RT+
Sbjct: 162 LLHTIVSAVRAAVPANIAVTAKMRLGVSDTSLAIDCATALAEGGAASLVVHARTR 216
>UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 477
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 383 AKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL--SIPVTCKIR 556
++L+ V +D+N GCP+ ++ + +G LL +P+ +++ + + V+ KIR
Sbjct: 185 SELIGRFVDGVDLNCGCPQPWAYEELLGSYLLRQPETVRDMVRAVKARMGSDFCVSVKIR 244
Query: 557 ILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
I T LV + +G + +HGRT+
Sbjct: 245 IDPDLRLTDALVRNALHAGASILQIHGRTR 274
>UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 354
Score = 43.6 bits (98), Expect = 0.004
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI--LKTPEATLE 586
+DIN+GCP +GG G AL D+ I+ + + + ++ KIR+ + L+
Sbjct: 127 VDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARRHTDLTLSAKIRVGHVGKEAHLLD 186
Query: 587 LVNKLVSSGIKAIAVHGR 640
L + G+ +AVH R
Sbjct: 187 FCKMLEAEGVDLLAVHAR 204
>UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Dihydrouridine
synthase family protein - Plesiocystis pacifica SIR-1
Length = 321
Score = 43.6 bits (98), Expect = 0.004
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +2
Query: 365 ARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL--VDNLSIP 538
ARA + A V ID+N GCP + G LL P + + + + +P
Sbjct: 75 ARAAETA--VALGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVTRAVRAAVPAELP 132
Query: 539 VTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
VT KIR+ + P +E+ + G + +HGRT+
Sbjct: 133 VTVKIRVGWEDPSPVVEIARAAEAGGASWLTIHGRTR 169
>UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Acidobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Acidobacteria bacterium
(strain Ellin345)
Length = 370
Score = 43.2 bits (97), Expect = 0.006
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Frame = +2
Query: 326 KKKVVLQLGTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQ 502
++ + QL D AK+V+ +D+N+GCP + +K G LL +
Sbjct: 88 ERPISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKV 147
Query: 503 ILKTLVDNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
I +++ ++IP T K R + LEL + G+ A+A+H RT+
Sbjct: 148 IFESVRKAVTIPFTVKFRAGWNEKELVFLELAKLAENCGLNAVAMHARTR 197
>UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3;
Alteromonadales|Rep: Dihydrouridine synthase, DuS -
Psychromonas ingrahamii (strain 37)
Length = 314
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI---LKTPEATL 583
ID+N GCP + K G LL P+ YQI+ + + + T ++I + +
Sbjct: 92 IDLNFGCPAKTVNKNKGGAVLLKSPEALYQIVTEVRKAVPVFQTLSVKIRLGYEDKSLAI 151
Query: 584 ELVNKLVSSGIKAIAVHGRTK 646
E + ++G +AVH RTK
Sbjct: 152 ENAQAIQAAGADELAVHARTK 172
>UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2;
Endopterygota|Rep: ENSANGP00000016833 - Anopheles
gambiae str. PEST
Length = 594
Score = 43.2 bits (97), Expect = 0.006
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 9/188 (4%)
Frame = +2
Query: 110 YENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQT 289
+ +K+ L+P+ +G LP R + +YG DI E + + T + +
Sbjct: 243 FRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGA--IQEWALTKRH--SS 298
Query: 290 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGV 469
+ + C K V E + DV ID+N GCP + G G
Sbjct: 299 EDLFGVQLCGHNPKLVTYAAQIIAE----------KADVDFIDLNTGCPIDLIFNQGGGS 348
Query: 470 ALLSKPDKAYQILKTLVDNLS---------IPVTCKIRILKTPEATLELVNKLVSSGIKA 622
ALL + + +LK +V + S V +I I E+V K G
Sbjct: 349 ALLRRQN----VLKVMVQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASL 404
Query: 623 IAVHGRTK 646
I +HGRTK
Sbjct: 405 ITIHGRTK 412
>UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 392
Score = 43.2 bits (97), Expect = 0.006
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = +2
Query: 377 KVAKLVEHDVAAIDINMGCP--KEFSIKGGMGVALLSKPDKAYQILKTLVD--NLSIPVT 544
K+A + +D +DINMGCP K S K G AL++ P A +I+K + N PV+
Sbjct: 87 KIANELGYD--GVDINMGCPSRKVLSPKQASGAALITNPSLAKEIVKITKEALNFEKPVS 144
Query: 545 CKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
K RI E + ++ S + +H RTK
Sbjct: 145 VKTRIGFDKIEIDEWIPLILESEPACLTLHLRTK 178
>UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Plesiocystis pacifica SIR-1
Length = 362
Score = 42.7 bits (96), Expect = 0.007
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Frame = +2
Query: 335 VVLQLGTCD-EARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILK 511
+ LQLG D EA A E ++IN+GCP + G GV L+ P + +
Sbjct: 77 LALQLGGDDPEALAACARIAAELGYDEVNINVGCPSDRVQSGNFGVCLMKDPARVRDCVV 136
Query: 512 TLVDNLSIPVTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGR 640
+ + + +PVT K RI L E L V+ + ++ VH R
Sbjct: 137 AMREAVELPVTVKHRIGVDELDRYEDMLHFVDVVAAAEPDLFTVHAR 183
>UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225;
n=3; Borrelia burgdorferi group|Rep: Putative
uncharacterized protein BB0225 - Borrelia burgdorferi
(Lyme disease spirochete)
Length = 335
Score = 42.3 bits (95), Expect = 0.010
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Frame = +2
Query: 335 VVLQLGTCDEARALKVAKLVEH--DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQIL 508
+ +Q+ T + ALK +++E + ++N+GCP G L+ ++ +IL
Sbjct: 61 IAIQIATNSKNDALKAIQILEKHFNFDEYNLNVGCPSLKIQNANCGACLMGNANQVGEIL 120
Query: 509 KTLVDNLSIPVTCKIRILKTP-------EATLELVN--KLVSS-GIKAIAVHGR 640
KT+ +N + P++ K R+ P E+ E+ N K++S GIK VH R
Sbjct: 121 KTMKENTNKPISIKHRLGIRPLSSDYKNESYSEVKNFVKIISDFGIKNFIVHAR 174
>UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Dihydrouridine
synthase, DuS - Desulfuromonas acetoxidans DSM 684
Length = 320
Score = 42.3 bits (95), Expect = 0.010
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 2/176 (1%)
Frame = +2
Query: 122 IILAPMVRIGTLPMRLLALKYGA-DIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
++LAPM + MR + G D+V+TE + R + ND + VD
Sbjct: 13 LMLAPMQGLTNRAMRAVQCDIGQPDVVFTEFVRVSHVARQRITPNDRREILAGVDDVP-- 70
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
VV +G E+ A + + A +++NMGCP + G G A+L
Sbjct: 71 -----------LVVQLIGHRSESLAEAAQIVADLGGAHVNLNMGCPFGRTTTGKTGGAML 119
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRT 643
+P+K L+ + V+ K+R PE +L+ G+ I +H RT
Sbjct: 120 QEPEKIGDCLRAIRAAFHGSVSVKVRAGYDDPEQIFDLLPVFEKYGVDFIVLHPRT 175
>UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_4738_3071 - Giardia lamblia ATCC
50803
Length = 555
Score = 42.3 bits (95), Expect = 0.010
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
Frame = +2
Query: 113 ENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTD 292
+ ++LAPM +GT+P R L + YG +I E + L + ++ + D+
Sbjct: 173 QKPLMLAPMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQ--ELRKIKRHPDEKC 230
Query: 293 GTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVA 472
I +E ++V + C ID+N CP++ + K G A
Sbjct: 231 FGIQLAGRGQELMEIVNFISQCCSC-------------DFIDLNAACPQDIATKKCCGAA 277
Query: 473 LLSKPDKAYQILKTLV---DNLSIPVTCKIRI--LKTPEATLELVNKLVSSGIKAIAVHG 637
L + K + +V ++ +PV KIR L+ + L SG+ ++VH
Sbjct: 278 LAANLKKLVSSVDCMVRGGEHYGVPVFLKIRAGDLRGDWTGDSVAQALRLSGLYGLSVHL 337
Query: 638 RT 643
RT
Sbjct: 338 RT 339
>UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase;
n=35; Actinobacteria (class)|Rep: Probable
tRNA-dihydrouridine synthase - Mycobacterium
tuberculosis
Length = 389
Score = 41.5 bits (93), Expect = 0.017
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Frame = +2
Query: 296 TIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKGGMGV 469
T+ T ++ LQL T D A+++ + A ID+N GCP K G G
Sbjct: 73 TMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGA 132
Query: 470 ALLSKPDKAYQILKTLV---DNLSIPVTCKIRI-LKTPEAT-LELVNKLVSSGIKAIAVH 634
AL K QI+ V + IPVT K RI + T L+ + G A+A+H
Sbjct: 133 ALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALH 192
Query: 635 GRT 643
RT
Sbjct: 193 ART 195
>UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase C
- Haemophilus ducreyi
Length = 325
Score = 41.5 bits (93), Expect = 0.017
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL--SIPVTCKIRI-LKTPEATL 583
ID N GCP + G ALL P+ Y K + + + + PV+ K+R+
Sbjct: 97 IDFNCGCPSKTVNGSHGGAALLKDPELIYCATKAIREAVPKAQPVSVKMRLGWDCASQCF 156
Query: 584 ELVNKLVSSGIKAIAVHGRTK 646
E+ + + +G I VHGRTK
Sbjct: 157 EIADAIQQAGADEITVHGRTK 177
>UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7;
Bacteria|Rep: TIM-barrel protein, yjbN family - Coxiella
burnetii
Length = 353
Score = 40.7 bits (91), Expect = 0.029
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Frame = +2
Query: 323 EKKKVVLQLGTCDEARALKVAKLVEHD-VAAIDINMGCPKEFSIKGGMGVALLSKPDKAY 499
E+ + LQ+G D A+L E I++N+GCP I G G LL + +
Sbjct: 81 EEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVA 140
Query: 500 QILKTLVDNLSIPVTCKIRILKTPEATLE----LVNKLVSSGIKAIAVHGR 640
+ + ++IPV+ K R + + E V + +G + +H R
Sbjct: 141 DCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHAR 191
>UniRef50_Q056Y8 Cluster: TRNA-dihydrouridine synthase A; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
TRNA-dihydrouridine synthase A - Buchnera aphidicola
subsp. Cinara cedri
Length = 348
Score = 39.9 bits (89), Expect = 0.051
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 413 IDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI 559
I++N+GCP + + G G+ L++ P Y ++K + + I ++ KIR+
Sbjct: 112 INLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAIYLTVPIQISIKIRL 160
>UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2;
Methylobacterium extorquens PA1|Rep: Dihydrouridine
synthase, DuS - Methylobacterium extorquens PA1
Length = 354
Score = 39.1 bits (87), Expect = 0.090
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Frame = +2
Query: 359 DEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIP 538
D A A ++A + A I++N+GCP + G G L+ +P + L + +P
Sbjct: 95 DLAAAARIA--ADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVGACVAALKAAVPVP 152
Query: 539 VTCKIRI----LKTPEATLELVNKLVSSGIKAIAVHGR 640
VT K R+ EA + + +V++G + VH R
Sbjct: 153 VTVKCRLGVDDQDIEEALDAVADAVVAAGGDGLVVHAR 190
>UniRef50_A7RQK6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 269
Score = 39.1 bits (87), Expect = 0.090
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 500 QILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGR 640
Q++K VD SIP+TCK+ + A + +N+L +G K + +HGR
Sbjct: 125 QLMKLAVDVSSIPITCKLAFSSRNISAVINRINELSVAGCKKVLLHGR 172
>UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 641
Score = 39.1 bits (87), Expect = 0.090
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Frame = +2
Query: 380 VAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL-VDNLSIPVTCKIR 556
+++L+ H + +D+N GCP + K G G ALL K ++++ + + +P+T KIR
Sbjct: 328 LSQLLPH-LRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEVPITAKIR 386
Query: 557 I-LKTPEATLE-LVNKLV-----------SSGIKAIAVHGRTK 646
+ + + T + LV +L + G A+ +HGRT+
Sbjct: 387 MGSRDGKLTAQKLVERLALGSEDLRDMIGAPGCAAVTLHGRTR 429
>UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase;
n=41; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
- Staphylococcus aureus (strain COL)
Length = 328
Score = 39.1 bits (87), Expect = 0.090
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 317 EEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKA 496
E+E+ V G E +L + ID+NMGCP K G G L+ +PD A
Sbjct: 67 EDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVA 126
Query: 497 YQILKTLVDNLSIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+I++ +PV+ K R+ + + + + I +++H RT+
Sbjct: 127 AEIIQATKAG-GLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTR 176
>UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 318
Score = 38.7 bits (86), Expect = 0.12
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 386 KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI-L 562
+L E I+ N+GCP K G +L+ PD + L+ ++ + + ++ K R+
Sbjct: 83 RLAELGYKEINWNLGCPAPMVAKKKRGSGMLAHPDLIVEFLEEVLPQIPVKLSIKTRLGY 142
Query: 563 KTPEATLELVNKLVSSGIKAIAVHGR 640
T EL+ +L + I +H R
Sbjct: 143 SNTAQTKELLPRLDQFPLTEIIIHAR 168
>UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2;
n=10; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
2 - Bacillus subtilis
Length = 325
Score = 38.3 bits (85), Expect = 0.16
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
Frame = +2
Query: 248 FNDILNTVDYV--DQTDGTIVFRTCEEEKKKVVLQL-GTCDEARALKVAKLVEHDVAAID 418
F + N+ Y D D T E+++ +V + G E + E +D
Sbjct: 41 FTEFTNSESYCHPDGKDSVRGRLTFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLD 100
Query: 419 INMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTP-EATLELVN 595
INMGCP G G L+ +P A ++++ +PV+ K R+ T + E +
Sbjct: 101 INMGCPVPNVAGNGKGSGLICRPAVAAELIQAAKAG-GLPVSVKTRLGYTDVDEWREWLT 159
Query: 596 KLVSSGIKAIAVHGRTK 646
++ I +++H RT+
Sbjct: 160 HILKQDIANLSIHLRTR 176
>UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 family;
n=17; Clostridiales|Rep: Predicted TIM-barrel enzyme,
nifR3 family - Clostridium acetobutylicum
Length = 311
Score = 37.9 bits (84), Expect = 0.21
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 386 KLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRILK 565
KL+ + +++N+GCP + G G L K + + L+ + ++ K RI K
Sbjct: 79 KLMNLGYSEVNLNLGCPSGTVVSKGRGAGFLKKRQELDEFLEKIFSKSPAKISIKTRIGK 138
Query: 566 -TPEATLELVNKLVSSGIKAIAVHGR 640
+P+ EL+ ++ + +H R
Sbjct: 139 DSPDEFYELIKIFNKYPLEELIIHPR 164
>UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 371
Score = 37.9 bits (84), Expect = 0.21
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 395 EHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNL---SIPVTCKIRILK 565
E ID+N GCP G G +LL P+ Y +K + D VT K+R
Sbjct: 89 EKSAPRIDLNCGCPANVVTGKGAGSSLLRDPEYVYACVKAVADGARGSGAHVTMKLR-SG 147
Query: 566 TPEATLELVNKLVS--SGIKAIAVHGRTK 646
+++L N L + +G + +++H RT+
Sbjct: 148 YDDSSLLRENLLAAREAGARFVSLHARTR 176
>UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3;
Gammaproteobacteria|Rep: Putative uncharacterized
protein - Marinobacter sp. ELB17
Length = 335
Score = 37.5 bits (83), Expect = 0.27
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG+ A AK E +DIN GCP + K G L+ +P+ ++I +
Sbjct: 70 LGSDPHMMARHGAKAAELGATQVDINFGCPAKTVNKHKGGCVLMREPELMHEITAAVRQA 129
Query: 527 L--SIPVTCKIRI-LKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ I VT K+R+ + L ++G I +H R+K
Sbjct: 130 VPADILVTAKMRLGYDDRSMGVACAQALDAAGAGEIVIHARSK 172
>UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7;
Desulfuromonadales|Rep: Dihydrouridine synthase, DuS -
Pelobacter propionicus (strain DSM 2379)
Length = 342
Score = 37.1 bits (82), Expect = 0.36
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 407 AAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATL 583
A I++NMGCP G G +L P + I+ L + + K+R P
Sbjct: 120 AHINLNMGCPYGRMTSGQTGGGMLRSPQELSSIIPALRKTIRGTFSIKLRSGYDNPRQIF 179
Query: 584 ELVNKLVSSGIKAIAVHGRT 643
+L+ +SG+ + +H RT
Sbjct: 180 DLLPLFEASGVDFLVLHPRT 199
>UniRef50_Q47741 Cluster: Dihydroorotate dehydrogenase B, catalytic
subunit; n=104; Bacteria|Rep: Dihydroorotate
dehydrogenase B, catalytic subunit - Enterococcus
faecalis (Streptococcus faecalis)
Length = 312
Score = 37.1 bits (82), Expect = 0.36
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 350 GTCDEARALKVAKLVEH-DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
G C+E AK+ + +V AI++N+ CP ++K G G+A + P+ A+Q+ + +
Sbjct: 105 GACEEDYVAVCAKIGQAPNVKAIELNISCP---NVKHG-GIAFGTDPEVAFQLTQAVKKV 160
Query: 527 LSIPVTCKI 553
S+P+ K+
Sbjct: 161 ASVPIYVKL 169
>UniRef50_Q1F0W8 Cluster: Dihydroorotate dehydrogenase 1; n=1;
Clostridium oremlandii OhILAs|Rep: Dihydroorotate
dehydrogenase 1 - Clostridium oremlandii OhILAs
Length = 372
Score = 36.7 bits (81), Expect = 0.48
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 347 LGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDN 526
LG A K+ + A+++ + CP ++G ++S+P K Y+ K +VD
Sbjct: 98 LGHTSSEIAYIAQKVEQFGADAVELGVSCPHGEGLEG-----VISEPSKLYEFTKAVVDR 152
Query: 527 LSIPVTCKI 553
+ IPV K+
Sbjct: 153 IKIPVMVKL 161
>UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Parabacteroides merdae ATCC 43184
Length = 320
Score = 36.7 bits (81), Expect = 0.48
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 416 DINMGCPKEFSIKGGMGVALLSKPDKAYQILKTLVDNLSIPVTCKIRI-LKTPEATLELV 592
DIN+GCP + G +L PD+ +L+T+ + I + K+R+ +PE L+
Sbjct: 92 DINLGCPFPMQARQHRGAGILPYPDEVKVLLETIFEFPEIQFSVKLRLGWDSPEEAQALL 151
Query: 593 NKLVSSGIKAIAVHGR 640
L + + +H R
Sbjct: 152 PFLNGLPLTHLTLHPR 167
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,640,267
Number of Sequences: 1657284
Number of extensions: 12307222
Number of successful extensions: 29372
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 28288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29199
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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