Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d02
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   5.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.7  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 163 HWQCSYSDHWRKYYFIFV 110
           +W+  Y D W +Y   F+
Sbjct: 121 YWRQQYEDFWHRYTLSFI 138


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 495 ALSGFDNSATPMPPFIENSFGHPILISIAATSCST 391
           A  G  N      P++  S  HP ++S+    C T
Sbjct: 841 AEGGCPNLYDARKPYVNGSEYHPSIVSLGEYKCVT 875


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 163 HWQCSYSDHWRKYYFIFVIHVYG 95
           HWQ      +R     FV+ +YG
Sbjct: 346 HWQIPLGRRFRALKLWFVLRLYG 368


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 492 LSGFDNSATPM 460
           L+ FDNS TPM
Sbjct: 67  LNHFDNSVTPM 77


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 492 LSGFDNSATPM 460
           L+ FDNS TPM
Sbjct: 67  LNHFDNSVTPM 77


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 492 LSGFDNSATPM 460
           L+ FDNS TPM
Sbjct: 67  LNHFDNSVTPM 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,875
Number of Sequences: 336
Number of extensions: 3501
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)