Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d02
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 221 4e-58
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 89 2e-18
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 60 1e-09
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 29 4.2
05_07_0219 - 28474661-28475146,28475979-28476644 28 5.5
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 28 7.3
01_03_0061 + 12137564-12137573,12137620-12137693,12138818-121389... 27 9.7
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 221 bits (540), Expect = 4e-58
Identities = 104/179 (58%), Positives = 134/179 (74%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
M Y +K++LAPMVR+GTLP RLLA +YGADI Y EE+ID KFL+ +R N+ L T D+++
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ T+VFRTC +E+ +VV Q+GT D RALK A+LV +DVAAIDINMGCPK FS+ GGM
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGM 120
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
G ALLSKP+ + IL TL NL VTCKIR+L T + T+EL ++ G+ A+AVHGR
Sbjct: 121 GAALLSKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGR 179
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 89.4 bits (212), Expect = 2e-18
Identities = 59/176 (33%), Positives = 88/176 (50%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K+++APMV LP R+L +YGA YT L R F++ ++
Sbjct: 63 KMVVAPMVDNSELPFRMLCRRYGATGAYTPML-------HSRIFSE--------NEKHRA 107
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
+ F TC+E++ V Q D L+ AK+VE +DIN GCP+ + +G G L+
Sbjct: 108 MEFTTCKEDRPLFV-QFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLM 166
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+ +++ L NL +PV+CKIRI E TL L +G +AVHGRT+
Sbjct: 167 NNLPLVKSLVQNLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTR 222
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 60.1 bits (139), Expect = 1e-09
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ K+ LAP+ +G LP R L GADI E + L+ +
Sbjct: 328 IDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQA------------- 374
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAA--IDINMGCPKEFSIKG 457
++ ++ R E+ V + G + A + +LV+++ + IDINMGCP + +
Sbjct: 375 -SEWALLRRHSSEDLFGVQI-CGAYPDTVA-RTVELVDNECSVDFIDINMGCPIDIVVNK 431
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G G +LL+KP + I++ P+T K+R + +V+ + G AI V
Sbjct: 432 GAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITV 491
Query: 632 HGRTK 646
HGR++
Sbjct: 492 HGRSR 496
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 167 LLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRT 313
+LA KY + T ++ W F S R + N ++ +GT+V T
Sbjct: 142 VLAWKYSHAYILTNRILPWAFYASLRFLMKLNNETVTIELKNGTVVHGT 190
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 492 LSGFDNSATPMPPFIENSFGHPILISIAATSCSTNLATFKALASSHVPS 346
+ FD + P PP + + HP S A +S T AT A +S P+
Sbjct: 67 VESFDTAPPPSPPPLSATTPHPPPPSPATSSSRTATATATATPTSPTPT 115
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 533 IPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHG 637
+P TC+ R+ E +EL+ K++ +G KA A+ G
Sbjct: 115 LPPTCEPRVTDHIEHIIELITKIMENG-KAYAMEG 148
>01_03_0061 +
12137564-12137573,12137620-12137693,12138818-12138928,
12139405-12139509
Length = 99
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 230 LRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKV 337
+ S+ +FN++L ++ + T IVF T E E K V
Sbjct: 45 MASEDKFNNLLRRIEEFEWTQAMIVFLTTEGEFKVV 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,672
Number of Sequences: 37544
Number of extensions: 318573
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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