Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d02
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49640.1 68416.m05425 nitrogen regulation family protein simi... 221 4e-58
At5g67220.1 68418.m08473 nitrogen regulation family protein simi... 97 7e-21
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 58 5e-09
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 30 1.1
At3g58970.1 68416.m06572 magnesium transporter CorA-like family ... 29 2.0
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 29 3.5
At2g41770.1 68415.m05163 expressed protein contains Pfam domain ... 28 4.6
At2g27770.1 68415.m03365 expressed protein 28 4.6
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ... 28 4.6
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p... 28 6.1
At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family pro... 27 8.1
>At3g49640.1 68416.m05425 nitrogen regulation family protein similar
to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111)
[Rhodobacter capsulatus]; contains Pfam domain PF01207:
Dihydrouridine synthase (Dus)
Length = 519
Score = 221 bits (539), Expect = 4e-58
Identities = 101/179 (56%), Positives = 135/179 (75%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
M+Y+NK++LAPMVR+GTL R+LA +YGADI Y EE+ID K ++ +RR N T ++V+
Sbjct: 217 MDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVE 276
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGM 463
+ +VF TC+EEK +VV Q+GT D RALK +++V +DVA IDINMGCPK FSI+GGM
Sbjct: 277 KGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGM 336
Query: 464 GVALLSKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGR 640
G ALLSKP+ + IL TL NL +PVTCKIR+LK+P T+EL ++ G+ A+AVHGR
Sbjct: 337 GAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGR 395
>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
to unknown protein (gb|AAF51525.1) ; contains Pfam
domain PF01207: Dihydrouridine synthase (Dus); similar
to (SP:P45672) NIFR3-like protein (SP:P45672)
[Azospirillum brasilense]
Length = 423
Score = 97.5 bits (232), Expect = 7e-21
Identities = 65/176 (36%), Positives = 88/176 (50%)
Frame = +2
Query: 119 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 298
K I+APMV LP RLL KYGA YT L R F + T Y +Q
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPML-------HSRIFTE---TEKYRNQE--- 135
Query: 299 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 478
F TC+E++ V Q D L+ AK VE +DIN+GCP+ + +G G L+
Sbjct: 136 --FTTCKEDRPLFV-QFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLM 192
Query: 479 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLVSSGIKAIAVHGRTK 646
+++ L NL++PV+CKIRI E TL+ L +G +AVHGRT+
Sbjct: 193 DNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTR 248
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 58.0 bits (134), Expect = 5e-09
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Frame = +2
Query: 104 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 283
+++ +K+ LAP+ +G LP R L GAD+ E + L+ +
Sbjct: 343 IDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQA------------- 389
Query: 284 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD--VAAIDINMGCPKEFSIKG 457
++ ++ R E+ V + G+ + + +V +L++ + V IDINMGCP + +
Sbjct: 390 -SEWALLRRHSSEDLFGVQI-CGSYPDTVS-RVVELIDRECTVDFIDINMGCPIDMVVNK 446
Query: 458 GMGVALLSKPDKAYQILKTLVDNLSIPVTCKIR--ILKTPEATLELVNKLVSSGIKAIAV 631
G ALL+KP + I++ + P+T K+R + L+ + + G A+ +
Sbjct: 447 SAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTI 506
Query: 632 HGRTK 646
HGR++
Sbjct: 507 HGRSR 511
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 308 RTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALLSKP 487
+T +E+KK + R ++ K VE VA +D + +EF ++ G G L P
Sbjct: 311 KTKSDEEKKDIEPKTPFFSDRPVRERKSVERLVAVVDKDSS--REFHVEKGKGTPLKDIP 368
Query: 488 DKAYQILKTLVDNL 529
+ AY++ + D +
Sbjct: 369 NVAYKVSRKKSDEV 382
>At3g58970.1 68416.m06572 magnesium transporter CorA-like family
protein contains Pfam profile PF01544: CorA-like Mg2+
transporter protein
Length = 436
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/92 (23%), Positives = 42/92 (45%)
Frame = +2
Query: 191 DIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEAR 370
D+ E L++ F++ N IL +Y+D T+ + + + + + LQL +
Sbjct: 320 DVEDLEMLLEAYFMQLDGMRNKILTVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASF 379
Query: 371 ALKVAKLVEHDVAAIDINMGCPKEFSIKGGMG 466
A+ L+ + +N+ CP +SI G G
Sbjct: 380 AIAAETLL---ASLFGMNIPCPL-YSIHGVFG 407
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 200 YTEELIDWKFLRSKRRFNDILNTVDYVDQTD-GTIVFRTCEEEKKKVVLQLGTC 358
Y EE+ D KFL + +F + ++ V D T+ K+VVL L TC
Sbjct: 357 YNEEIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTC 410
>At2g41770.1 68415.m05163 expressed protein contains Pfam domain
PF03385: Protein of unknown function, DUF288
Length = 771
Score = 28.3 bits (60), Expect = 4.6
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 224 KFLRSKRRFNDILNTVDYV-DQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEH 400
+FL+S R N++ V D+T F+T +K +V+ + + K+
Sbjct: 85 QFLQSLSRPQIKWNSIPVVPDKTSPYANFQT----EKWIVVSVTKYPTEELKSLVKIRGW 140
Query: 401 DVAAIDINMGCPKEFSIKGGMGVALLSKPDKAYQILKTL 517
V AI N PK++S+KG + ++L ++ + Y++L L
Sbjct: 141 QVLAIG-NSATPKDWSLKGSIFLSLDAQAELGYRVLDHL 178
>At2g27770.1 68415.m03365 expressed protein
Length = 320
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 453 FIENSFG--HPILISIAATSCSTNLATFKALASSHVPSCKTT 334
F ENS HP+ IS +++SCS ++ S +PS +T+
Sbjct: 8 FSENSINVTHPLSISSSSSSCSKYSTNNVCISPSLIPSIQTS 49
>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
putative similar to pathogen-inducible alpha-dioxygenase
[Nicotiana attenuata] GI:12539609; contains Pfam profile
PF03098: Animal haem peroxidase
Length = 631
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 359 DEARALKVAKLV-EHDVAAIDINMGCPKEFSIKG 457
D+ A+KV + V E D+ +D+N+G E IKG
Sbjct: 507 DDEEAIKVLREVYEDDIEKLDLNVGLHAEKKIKG 540
>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
protein similar to SP:P28493 Pathogenesis-related
protein 5 precursor (PR-5) from [Arabidopsis thaliana],
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 247
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 416 DINMGCPKEFSIKGGMGVALLSKPDKAYQILK-TLVDNLSIPVTC 547
D+N CPKE + G GVA +A+ + S P TC
Sbjct: 162 DVNAICPKELQVTGPSGVAACKSACEAFNKPEYCCTGAYSTPATC 206
>At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family protein
contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 977
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 23 YTIHYLIRRCRFKTFIT*SILLQFPINMNYENK-IILAPMV 142
Y IH + +CRF + +L +F +N + K ++ AP V
Sbjct: 931 YAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSV 971
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,432
Number of Sequences: 28952
Number of extensions: 282971
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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