Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d01
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 34 0.018
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.68
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 29 0.68
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.68
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 3.6
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 6.4
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.4
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 8.4
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 8.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 8.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.4
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 25 8.4
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 34.3 bits (75), Expect = 0.018
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 7/193 (3%)
Frame = +2
Query: 143 ILRKKDLYCRECFLANVTHKFRSS--IGKNKILG-KADNVLICLSGKEGSTVLLDLINNA 313
+L K D C CF+ + +K R + + + G K+ ++ +SG S +L+ N
Sbjct: 23 VLTKSDAVCDSCFVRRIENKIRRQFELVRPNLQGRKSKRAMLAISGGISSMAMLETANYL 82
Query: 314 LSL--DNHKKLRITPIFLHLCENYET-IKNVIEQCQKYNYDLYSPHISEYVQSKSHIPIV 484
DN++ + + +H ++ + IE+ NY + + +
Sbjct: 83 SKYRDDNYRPMFDELLAVHFQWGTDSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIAT 142
Query: 485 NSLPIVN-NELIEEYNNMQNSMLPTVKDDFITNIKRTLYIRYAKLLNCKYIFXXXXXXXX 661
+S + N E++N S L + + D + I+ L + YA+ NC I
Sbjct: 143 DSRGNIEINADNEKFNPEVISSLAS-RQDLLYRIRDKLLVSYARKANCDTIVFGDSGTTI 201
Query: 662 XXXXXXXXAIGRG 700
A GRG
Sbjct: 202 AARVLELVAEGRG 214
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.68
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 371 ENYETIKNVIEQCQKYNY--DLYSPHISEYVQSKSHIPIVNSLPIVNNELIEEYNNMQNS 544
+N ++ + + C K L P Y KSH+P N+ PI+ ++ + Y+NM +S
Sbjct: 635 KNIAKMQEIRKLCNKIQTVRQLQLPQPFYYEHHKSHVPFANNEPIL-LDIPQNYDNM-SS 692
Query: 545 MLPTVKD 565
P D
Sbjct: 693 FKPLAHD 699
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 134 ALIILRKKDLYCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVL 292
AL+ + C+ECF + + I +NK+ + + V I SG + STVL
Sbjct: 15 ALVRPKTGQKICKECFYYVFETEIHNVIIENKLFVRGERVGIGASGGKDSTVL 67
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +2
Query: 443 ISEYVQSKSHIPIVNSLPIVNNEL--IEEYNNMQNSMLPTVKDDFITNIKRTLYIRYAKL 616
I E + S++ + L + NNE+ IEE +++QN M+ + ++ +TN+K + + + ++
Sbjct: 724 IKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKASQPMIHLRI 783
Query: 617 L 619
L
Sbjct: 784 L 784
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +2
Query: 164 YCRECFLANVTHKF-----RSSIGKNKILGKA-DNVLICLSGKEGSTVLLDLINNALSL- 322
+C++C L + + R I I KA DN L+C+S + ++L+D I+ ++
Sbjct: 148 FCKDCSLVFMGLQLLPSMVREGIDPFTIFAKAFDNSLVCVSFAQNPSMLIDSIDLVRNMP 207
Query: 323 DNHKKLRITPIFLHLCEN 376
D KK + +F + E+
Sbjct: 208 DFTKKTDMLNLFPRIAEH 225
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +2
Query: 257 ICLSGKEGSTVL--LDLINNALSLDNHKKLR-ITPIFL---HLCENYETIKNVIEQCQKY 418
I LS + +VL + +N++ SL++ + P F+ E+Y +++ + +
Sbjct: 17 IVLSSAQWLSVLDEAENLNSSFSLESVDSFAPVRPRFIIDEDFAEDYNLTVDILHRPLQE 76
Query: 419 NYDLYSPHISEYVQS 463
N+D + P++ YV+S
Sbjct: 77 NFDSFFPNVEAYVES 91
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 197 HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKK 337
H F S+ +NKIL ++ ++ L G S D + LSL+ K
Sbjct: 842 HPFVPSVSENKILNRSFSLTRSLKGLALSLAGSDRASELLSLNGENK 888
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 251 VLICLSGKEGSTVLLDLINNALSLDNHKKLRITPIFL 361
+L+C S + LLD + +AL D H K+ T I L
Sbjct: 140 LLVCPSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQL 176
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 494 PIVNNELIEEYNNMQNSMLP 553
P V+N+LIEE N Q+ +P
Sbjct: 315 PDVSNDLIEELNQFQSQYVP 334
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 236 GKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 340
G+ D VL L G VLLD + + L D H+ L
Sbjct: 676 GRRDEVLKGLIMNSGKMVLLDKLLSRLRRDGHRVL 710
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 197 HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 340
H+ +S N+ L +N +S +GS L+LINN + D++ +
Sbjct: 773 HEKKSLNSDNQSLRPLENENQSVSSTQGSNSPLELINNLPASDDYSSI 820
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 482 VNSLPIVNNELIEEYNNMQNSMLPTVKDDFITNIK 586
+N+L NEL+++YNN+Q + +++ N K
Sbjct: 546 INNLLERRNELLDDYNNVQKILNESLEASVHLNTK 580
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 315 NALLIKSNKTVEPSFPDKQIK 253
NA LIK N T EPS+ ++++
Sbjct: 92 NASLIKQNSTTEPSYDLQELR 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,682
Number of Sequences: 5004
Number of extensions: 54939
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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