Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11d01
(731 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC125269-1|AAI25270.1| 515|Homo sapiens hypothetical protein LO... 59 1e-08
BC108659-1|AAI08660.1| 515|Homo sapiens hypothetical protein LO... 59 1e-08
BC080540-1|AAH80540.1| 507|Homo sapiens LOC348180 protein protein. 59 1e-08
BC063512-1|AAH63512.1| 589|Homo sapiens LOC348180 protein protein. 59 1e-08
BC044951-1|AAH44951.1| 353|Homo sapiens LOC348180 protein protein. 40 0.009
BC031054-1|AAH31054.2| 635|Homo sapiens OSGIN2 protein protein. 33 1.4
AF069291-1|AAC62231.1| 505|Homo sapiens hT41 protein. 33 1.4
AF061326-1|AAD18134.1| 505|Homo sapiens T41p protein. 33 1.4
X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 31 4.3
X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 31 4.3
M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 31 4.3
M17367-1|AAA51741.1| 728|Homo sapiens APOB protein. 31 4.3
M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 31 4.3
M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 31 4.3
J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 31 4.3
AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 31 4.3
AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 31 4.3
>BC125269-1|AAI25270.1| 515|Homo sapiens hypothetical protein
LOC348180 protein.
Length = 515
Score = 59.3 bits (137), Expect = 1e-08
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +2
Query: 137 LIILRKKDLYCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNAL 316
++++R D +CR+CF A HKFR+ +GKN+++ + VL+ SG S+ ++ + L
Sbjct: 37 VVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGL 96
Query: 317 SLDNHKKLR 343
S D+ K+LR
Sbjct: 97 SQDSAKRLR 105
>BC108659-1|AAI08660.1| 515|Homo sapiens hypothetical protein
LOC348180 protein.
Length = 515
Score = 59.3 bits (137), Expect = 1e-08
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +2
Query: 137 LIILRKKDLYCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNAL 316
++++R D +CR+CF A HKFR+ +GKN+++ + VL+ SG S+ ++ + L
Sbjct: 37 VVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGL 96
Query: 317 SLDNHKKLR 343
S D+ K+LR
Sbjct: 97 SQDSAKRLR 105
>BC080540-1|AAH80540.1| 507|Homo sapiens LOC348180 protein protein.
Length = 507
Score = 59.3 bits (137), Expect = 1e-08
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +2
Query: 137 LIILRKKDLYCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNAL 316
++++R D +CR+CF A HKFR+ +GKN+++ + VL+ SG S+ ++ + L
Sbjct: 29 VVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGL 88
Query: 317 SLDNHKKLR 343
S D+ K+LR
Sbjct: 89 SQDSAKRLR 97
>BC063512-1|AAH63512.1| 589|Homo sapiens LOC348180 protein protein.
Length = 589
Score = 59.3 bits (137), Expect = 1e-08
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +2
Query: 137 LIILRKKDLYCRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNAL 316
++++R D +CR+CF A HKFR+ +GKN+++ + VL+ SG S+ ++ + L
Sbjct: 40 VVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGL 99
Query: 317 SLDNHKKLR 343
S D+ K+LR
Sbjct: 100 SQDSAKRLR 108
>BC044951-1|AAH44951.1| 353|Homo sapiens LOC348180 protein protein.
Length = 353
Score = 39.9 bits (89), Expect = 0.009
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +2
Query: 197 HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKLR 343
HKFR+ +GKN+++ + VL+ SG S+ ++ + LS D+ K+LR
Sbjct: 2 HKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLR 50
>BC031054-1|AAH31054.2| 635|Homo sapiens OSGIN2 protein protein.
Length = 635
Score = 32.7 bits (71), Expect = 1.4
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 179 FLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKLRITP-- 352
F+ + +F ++I K K+ GK D VLI SG + +L N+ + + + + R+T
Sbjct: 410 FVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPS 469
Query: 353 -IFLHLCEN-YETIKNVIEQCQKYNYDLYSPHISEYVQSKSH 472
IF L + Y V +Y + S +S+Y H
Sbjct: 470 LIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEH 511
>AF069291-1|AAC62231.1| 505|Homo sapiens hT41 protein.
Length = 505
Score = 32.7 bits (71), Expect = 1.4
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 179 FLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKLRITP-- 352
F+ + +F ++I K K+ GK D VLI SG + +L N+ + + + + R+T
Sbjct: 280 FVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPS 339
Query: 353 -IFLHLCEN-YETIKNVIEQCQKYNYDLYSPHISEYVQSKSH 472
IF L + Y V +Y + S +S+Y H
Sbjct: 340 LIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEH 381
>AF061326-1|AAD18134.1| 505|Homo sapiens T41p protein.
Length = 505
Score = 32.7 bits (71), Expect = 1.4
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 179 FLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKLRITP-- 352
F+ + +F ++I K K+ GK D VLI SG + +L N+ + + + + R+T
Sbjct: 280 FVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPS 339
Query: 353 -IFLHLCEN-YETIKNVIEQCQKYNYDLYSPHISEYVQSKSH 472
IF L + Y V +Y + S +S+Y H
Sbjct: 340 LIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEH 381
>X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein.
Length = 4560
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1792 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1823
>X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for
apolipoprotein B-100. ).
Length = 4563
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
>M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 (apoB) gene, exons 22 through 29. ).
Length = 4563
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
>M17367-1|AAA51741.1| 728|Homo sapiens APOB protein.
Length = 728
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 125 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 156
>M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein.
Length = 3262
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 514 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 545
>M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein.
Length = 4563
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
>J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein
B-100 mRNA, complete cds. ).
Length = 4563
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
>AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including
Ag(x) antigen) protein.
Length = 4563
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
>AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein.
Length = 3929
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 281 STVLLDLINNALSLDNHKKLRITPIFLHLCEN 376
+T+ DL NAL L N+ KLR+ P+ LH+ N
Sbjct: 1795 TTLNSDLKYNALDLTNNGKLRLEPLKLHVAGN 1826
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,223,833
Number of Sequences: 237096
Number of extensions: 1699620
Number of successful extensions: 2707
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2707
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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