Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11d01
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    31   0.84 
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL021472-6|CAK55193.1|  290|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.     28   7.8  
AF036706-18|AAK39278.1|  448|Caenorhabditis elegans Enhanced rna...    28   7.8  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    28   7.8  
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated...    28   7.8  
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated...    28   7.8  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   7.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   7.8  

>Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical
           protein F29F11.3 protein.
          Length = 349

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
 Frame = +2

Query: 152 KKDLYCRECFLANVTHKFRSSIGKNKILGKAD--NVLICLSGKEGSTVLLDLINNALSLD 325
           KK  YC+ECF+  V +KFRSS+ K KI   AD  + LI   G    T LL  IN+AL   
Sbjct: 30  KKAWYCQECFVQMVRNKFRSSLSKKKIYKDADARDTLIVFDGTLSGTFLLHQINDALKQI 89

Query: 326 NHKKLRITP---IFLHLCENYETIKNVIEQCQK 415
            +K+L + P   + + L E+ E I+ VI++ Q+
Sbjct: 90  TYKRLMVKPTVLVLVSLTEDTE-IQMVIKRIQE 121


>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 296 DLINNA--LSLDNHKKLRITPIFLH--LCENYETIKNVIEQCQKYNYDLYSPHI 445
           DL+N +  L +D    + + P  +   L     T   +I+  +K NYD+YSPH+
Sbjct: 427 DLVNESKRLLIDARSPIEMVPKAVRPALAATGATTDYIIKTIEKNNYDIYSPHL 480


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 482 QLVYEIWIEHILIYVVNIGHNCTFDIVLLHSLLFRSFHTSVE 357
           ++ Y IWI  I I +V +  +CT D  ++  LL R+ H+S E
Sbjct: 68  KMKYRIWILLIFIPIVVLCDDCTSDEDVIADLLGRNSHSSGE 109


>AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical
           protein F29C4.6 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 167 CRECFLANVTHKFRSSIGKNKILGKADNVLICLSGKEGSTVL 292
           C  CF  N       +I  NK+  + + V I  SG + STVL
Sbjct: 32  CGPCFSRNFEDDVHEAIVNNKLFKRGERVAIGASGGKDSTVL 73


>AL021472-6|CAK55193.1|  290|Caenorhabditis elegans Hypothetical
           protein Y17D7B.8 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 395 VIEQCQKYNYDLYSPHISEYVQSKSHIPI-VNSLPIVNNELIEEYNNMQNSMLPTVKDDF 571
           ++E+C+ Y+Y       S   QSKS++ I  ++  I NN   + + N++ S       D 
Sbjct: 68  MLEKCRFYSYATNGQSFSILAQSKSYVAIKTDASNIPNNTCPDTFTNIKFSYTSPATGDT 127

Query: 572 ITNIKRTLYIRY 607
            +  K +  + Y
Sbjct: 128 YSFKKNSTGLSY 139


>Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical
           protein F28H7.1 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 547 HAILHVIVLFYKFIVYNR*RIHNWYMRFGL 458
           +A+LH   L+  F+++N   +  W+M +GL
Sbjct: 103 YAVLHSHFLYRFFVLFNNQFLTRWFMPYGL 132


>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36   YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 137
            Y  VF RF+F +  T+ ++ L    V +A+H LH
Sbjct: 1208 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1241


>AF036706-18|AAK39278.1|  448|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform a protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 173 ECFLANVT--HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 340
           +C L+N+   H FRS I   K   +  N LI  +GK G   +L+ ++ +   + H  L
Sbjct: 263 QCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGL 320


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 173 ECFLANVT--HKFRSSIGKNKILGKADNVLICLSGKEGSTVLLDLINNALSLDNHKKL 340
           +C L+N+   H FRS I   K   +  N LI  +GK G   +L+ ++ +   + H  L
Sbjct: 263 QCLLSNIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGL 320


>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
            protein 89, isoform c protein.
          Length = 1393

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36   YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 137
            Y  VF RF+F +  T+ ++ L    V +A+H LH
Sbjct: 1172 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1205


>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
            protein 89, isoform d protein.
          Length = 1396

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36   YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 137
            Y  VF RF+F +  T+ ++ L    V +A+H LH
Sbjct: 1175 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 1208


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36   YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 137
            Y  VF RF+F +  T+ ++ L    V +A+H LH
Sbjct: 7220 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 7253


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36   YYWVFFRFIF*ESKTKPKLTLAT*NVKNAIHLLH 137
            Y  VF RF+F +  T+ ++ L    V +A+H LH
Sbjct: 7860 YEDVFSRFVFNDYYTEEQVALTMRQVTSALHFLH 7893


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,874
Number of Sequences: 27780
Number of extensions: 295817
Number of successful extensions: 851
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)