Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c24
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054     28   6.9  

>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
          Length = 995

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 52  FCHYHHIENLSELNSNVSEMYCFNLTFTVYTVHTENVYVTVL 177
           FCHY  +EN S+ +SN+S +    L  T+  VHT N    VL
Sbjct: 400 FCHYALLENYSK-SSNLSTI----LPATLRAVHTSNCSKLVL 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,897
Number of Sequences: 37544
Number of extensions: 290927
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)