Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c23
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)        30   1.5  
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)              30   2.0  
SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)                    29   4.5  
SB_25028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)
          Length = 360

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 463 SHGLDNISLMSMNFSHYELMRNLSQANSNSDGTFSGSNCNTATRPVDLNEKN 618
           +  LDN+++ ++N    E + NL+  N+NS  T++ SN ++    V+L   N
Sbjct: 301 TENLDNVTIYNINGQIIESIENLNGVNNNS--TYTISNLSSGFYLVELTSNN 350


>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
          Length = 610

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/139 (18%), Positives = 50/139 (35%)
 Frame = +1

Query: 202 NQTLNNEKRFINKARSHNTGPSQFVRNEPVKRKSVLLNETINSLDLAFGRLKKCRLSNGV 381
           N T NN     N A ++N   +    N      +   N T N+             +N  
Sbjct: 69  NATANNATA--NNATANNATANNVTANNATANNATANNATANNATANNATANNATANNAT 126

Query: 382 GRASTPGSPTIRHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANSNSDGT 561
              +T  + T  +       ++ A+  +   +N +  + N ++     N + AN+N+   
Sbjct: 127 ANNATANNATANNATANNATANNATANNATANNATANNANANN----ANANNANANNANA 182

Query: 562 FSGSNCNTATRPVDLNEKN 618
            + +N N A    + N  N
Sbjct: 183 NNANNANNANNANNANNAN 201


>SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)
          Length = 326

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 298 KSVLLNETINSLDLAFGRLKKCRLSNGVGRASTPGSPTIRHR 423
           KS + N+ I   D+A G++K+  +S    + +T     I+H+
Sbjct: 83  KSAIFNQNITFRDMATGQIKEIPVSTVASQKNTSAFSAIKHK 124


>SB_25028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 541 SLVINSALVRNARSSLTLKIYCLIRG*MWKRDSSSLKYHYD 419
           +LV+   LV+ +R S+T  I  + +  MW  D++SLKY  D
Sbjct: 7   ALVVVVLLVQASRCSITSDIGDVCQD-MWNEDTNSLKYGVD 46


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 514 ELMRNLSQANSNSDGTFSGSNCNTATRPVDL 606
           E MR        S   F+GS CN  +RP+DL
Sbjct: 53  EKMRQQISELKTSAKVFNGSKCNLCSRPLDL 83


>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 70  GDLFIEIRKCTKYCMKHASLLIAR*CATQLCYLTIQYLYEIDMENQTL 213
           GDLF  I + TKY   HAS ++ R  A+ L YL    +   D++ + L
Sbjct: 101 GDLFEAIVEATKYTEVHASHMV-RDLASALDYLHCNSIVHRDIKPENL 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,787
Number of Sequences: 59808
Number of extensions: 405056
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)