Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c23
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 421 RNDILMNSSRASTFSHGLDNISLMSMNFSHYE-LMRNLSQANSNSDGTFSGSNCNTATRP 597
           RN  + +S  + T  H   +   +S    +   ++ + + AN+NS  +   S    AT  
Sbjct: 712 RNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTS 771

Query: 598 VDLN--EKNEHLER 633
           ++    EK+EH E+
Sbjct: 772 LEAEKREKSEHCEK 785


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -2

Query: 581 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 405
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 325 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 369


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -2

Query: 581 LQLLPLNVPSELEFACDKFRISS*CEKFIDIKDILSNPWLNVEARLEFIKISLR*RIVG 405
           LQL+   +PS  E  CDK        +F+D  +  +N  L++E  L+F+K++L  RI G
Sbjct: 340 LQLIENVIPSNEELICDK--------RFVD--ESANN--LSIE-ELDFVKLNLI-RIAG 384


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 69  TNFGLMSNVNFPLNFNDNC 13
           +N  + +N N+  N+N+NC
Sbjct: 86  SNKTIHNNNNYKYNYNNNC 104


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 47  FDIKPKFVVIYLL 85
           FD+KP+F  IY L
Sbjct: 361 FDVKPEFGSIYFL 373


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 598 VDLNEKNEHLERYFRSAEIWSDRN 669
           +D++EKN+ L       +IW+D +
Sbjct: 43  IDVDEKNQILTTNCWVTQIWTDHH 66


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 542 ILIQMVHLVEVIVIPQRGLS 601
           IL+QM+HL+    +   G+S
Sbjct: 12  ILLQMIHLIAWASLENTGIS 31


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 391  STPGSPTIRHRNDILMNSSRASTF 462
            STP +  +  +ND +++ S +S+F
Sbjct: 935  STPVNKKVYKQNDYIVDESSSSSF 958


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,828
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)