Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c23
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             29   2.1  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    29   2.8  
At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ...    29   3.8  
At5g12180.1 68418.m01429 calcium-dependent protein kinase, putat...    28   6.6  
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR...    27   8.7  
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    27   8.7  
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/73 (23%), Positives = 31/73 (42%)
 Frame = +1

Query: 424 NDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANSNSDGTFSGSNCNTATRPVD 603
           +DIL+       F +G+++   +         ++N+ +A       F+  +     R   
Sbjct: 723 DDILLLWKITRLFDNGVESREALDAVIDRCSALQNIREAVLQYRKVFNQQHVEPRVRSAA 782

Query: 604 LNEKNEHLERYFR 642
           L    E+LERYFR
Sbjct: 783 LKRGAEYLERYFR 795


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 527 IYHKRILIQMVHLVEVIVIPQRGLSI*TKKTNTWRDISVVRKYGAIG 667
           +Y    +   VH V+ +  P  G+S      NTWRD  VVR  GA G
Sbjct: 567 LYEVTGVFGFVHYVKSVYSPPDGIS-----PNTWRDCWVVRAPGADG 608


>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
           similar to casein kinase II, alpha chain (CK II) [Zea
           mays] SWISS-PROT:P28523; contains protein kinase domain,
           Pfam:PF00069
          Length = 432

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 520 MRNLSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYFRSAEIW 657
           +RN S AN+N     S S+ + A R + L+   ++L R+  SA ++
Sbjct: 14  LRNASAANNNLFSLLSFSSSSPAKRNLLLSSLQDNLRRFASSASLY 59


>At5g12180.1 68418.m01429 calcium-dependent protein kinase, putative
           / CDPK, putative
          Length = 528

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/68 (22%), Positives = 30/68 (44%)
 Frame = +1

Query: 439 NSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANSNSDGTFSGSNCNTATRPVDLNEKN 618
           +SS   T       ++      S YE+ + +  A+++ +GT        AT  ++  ++ 
Sbjct: 389 DSSGTITLEELRQGLAKQGTRLSEYEVQQLMEAADADGNGTIDYGEFIAATMHINRLDRE 448

Query: 619 EHLERYFR 642
           EHL   F+
Sbjct: 449 EHLYSAFQ 456


>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 620  SFFSFRSTGRVAVLQLLPLNVPSELEFACDKFRI 519
            S+F++R+TG   +L  +PL +P++L     +FR+
Sbjct: 955  SYFTYRTTGTSTILPNIPL-LPTQLSQPFFRFRV 987


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; weak hit to Pfam profile
           PF02178: AT hook motif
          Length = 1752

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 163 YLTIQYLYEIDMENQTLNNEKRFINKARS-HNTGPSQFVRNEPVKRKSVLLNE 318
           Y     LY +D EN+ ++N    INK +   NT   Q ++ E ++    +LN+
Sbjct: 437 YAKYSQLYIVDTENE-VDNRATVINKGKGRRNTPAKQKLKKEVIEALIEMLNK 488


>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 429 YFNELESRFHIQPRIRQYIFNVNEL 503
           YF++++SRF++ P+++ Y   V+ L
Sbjct: 512 YFSQMKSRFNLNPQLKHYSIMVDLL 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,086
Number of Sequences: 28952
Number of extensions: 277081
Number of successful extensions: 668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)