Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c22
         (554 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.1  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   5.5  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 165 VCRVYRILVHVMLAYRKGPRYSADFRIL 82
           VC+ Y++ +HV  A+  G   SA  R L
Sbjct: 309 VCQKYKLWLHVDAAWGGGALVSAKHRHL 336


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 377 PEKHIENVFEKLT---NNDLQNLDGAPIKNVVLSFKRQVKKTLCTYPI 511
           P+ +I +    L+   NN L     API+ V L  KR++     + PI
Sbjct: 39  PQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPI 86


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 347 PKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPIKNVV 463
           P  RDL+  + ++ +   FE LTN  +   +G  +  VV
Sbjct: 23  PTERDLIVTLDDRDLWLRFECLTNEMIVTKNGRRMFPVV 61


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -3

Query: 255 IALVWFWTGRGSGPVAMHTACWRRYTWF*AVCRVYRILVHVMLA 124
           +A+++  T  G+  V +     RRY     + R+Y  ++H+ +A
Sbjct: 42  LAIIFLVTVIGNSTVLLALWTRRRYAGRKKLSRMYFFILHLSIA 85



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 71  YLWCKILKSAEYLGP 115
           +L CK++K  + LGP
Sbjct: 110 FLLCKVVKYGQTLGP 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,683
Number of Sequences: 336
Number of extensions: 2744
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)