Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c22
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   2.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.7  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   7.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   7.5  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 65  NLYLWCKILKSAEYLGPLRYANIT*TSILYT 157
           NL+LWCK L    +  P+    +    +L+T
Sbjct: 547 NLFLWCKQLVEINFKDPMLITRLISVLVLFT 577


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 206 CTLHVGADIHGFKLFVECTEYL 141
           C   +G D +G+KLFV   EY+
Sbjct: 698 CLPELGLDGYGYKLFVPINEYI 719


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 296 WTQLVAWGLLATAPEFSPK-TRDLVTNVPEKHIENVFEK----LTNNDLQNLDGAPIKNV 460
           W  L ++  ++  P+FSPK  + ++  +  + IE +F +      +  + N +G+P+K  
Sbjct: 454 WKNLPSYLKMSEVPKFSPKWIQAIILELKFRQIELIFYRPFIHSISTPIDNQNGSPMKPA 513

Query: 461 VLSFK 475
             + K
Sbjct: 514 NFALK 518


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 285 TFALAFDTLFIALVWFW 235
           TF L F  +F+A++W W
Sbjct: 674 TFFLLFAFIFVAVIWTW 690


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 77  WCKILKSAEYLGPLRYANIT*TSILYTLQ 163
           W + L   +YL P+RYAN+    I Y LQ
Sbjct: 160 WIQHLAPFDYL-PVRYANVQSNLIKYWLQ 187


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 278 ANVPAPWTQLVAWGLLATAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNL 436
           A VP+   + +   LL T+  F P +R  ++    KH   +   +T +D  +L
Sbjct: 67  AKVPSNVNKRLELQLLLTSGTFLPNSRPYLSERVRKHTHLLSNSITGDDKPSL 119


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 296 WTQLVAWGLLATAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDL 427
           W  L  +G        SP+T      V EKH+ N  ++ TN+ L
Sbjct: 232 WVGLFLFGFACFREVLSPQTDVKEEVVEEKHVINDVKQDTNSKL 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,417
Number of Sequences: 5004
Number of extensions: 43351
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)