Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c22
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337     30   1.4  
05_01_0472 + 3772633-3773145                                           29   2.5  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    27   7.6  

>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
          Length = 516

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 329 TAPEFSPKTRDLVTNVPEKHIENVFEKLTNNDLQNLDGAPIKNVVLSFKR 478
           T PE   + +D VTN  EK  + +F K+T++         IK++ L  KR
Sbjct: 205 TLPEIENQEQDHVTNSEEKTFDEIFVKITSSANSGGRKQAIKDLRLLTKR 254


>05_01_0472 + 3772633-3773145
          Length = 170

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 364 SNKRSRKTHRKRIRKAYKQRSSESRWRPHKKCCV 465
           S KRS   HR+R+       S  + WRPH +C V
Sbjct: 138 SEKRSSSLHRRRMSAG----SRTAAWRPHLECIV 167


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 209 ATGPD--PRPVQNQTSAIKSVSNARANVPAPWTQLVAWGLLATAPEFSP 349
           A GP   PRP+Q+Q + +       ANVPA  T+     L+     F+P
Sbjct: 101 AIGPSNPPRPLQDQEAYVWPWMGILANVPAEKTKEDGASLMQQLANFNP 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,645,581
Number of Sequences: 37544
Number of extensions: 285507
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)