Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c22
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30230.1 68415.m03678 hypothetical protein                          29   2.1  
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    28   3.6  
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    28   4.8  
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    27   6.4  
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi...    27   8.4  
At5g27860.1 68418.m03342 expressed protein                             27   8.4  
At3g02710.1 68416.m00262 nuclear associated protein-related / NA...    27   8.4  
At2g38750.1 68415.m04758 annexin 4 (ANN4) nearly identical to an...    27   8.4  

>At2g30230.1 68415.m03678 hypothetical protein
          Length = 177

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 349 KDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPH 450
           +D  LS K S      R R+ + + +S S WRPH
Sbjct: 135 EDVMLSEKMSSAGKENRHRRKHSRSASVSTWRPH 168


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 304 VSRVGSPCDCARIQSKDSRLSNKRSRKTHRKRIRKAYKQRSSES 435
           V R+ S     R   +D R   KRS   HRK  R+  + +SS S
Sbjct: 187 VERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLS 230


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 11  KKNDRGKETIVTIHDLP*NLYLWCKILKSAEYLG 112
           K  D G   I     LP N+  W KILKS EY G
Sbjct: 64  KTGDSGNREITKTGSLPVNIPDWSKILKS-EYRG 96


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 248 SAIKSVSNARANVPAPWTQLVAWGLLATAPEFSPKTRDLVTNVPEK 385
           +A+  + +  A V   W  LV  GL ATA  F+ +  D++   P K
Sbjct: 767 AAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRK 812


>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform I GI:1914683 from [Daucus carota]
          Length = 378

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 209 ATGPDPRPVQNQTSAIKSVSNARANVPAPWTQLVAWGLLATA 334
           A+ P P   Q QT A   VS   A+VP P +        ATA
Sbjct: 86  ASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATA 127


>At5g27860.1 68418.m03342 expressed protein
          Length = 177

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 343 QSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRW 441
           + +DS    K+SR T +KR R+ +   SS+S +
Sbjct: 34  RDRDSLKVRKKSRSTSKKRRRRQHSSDSSDSSY 66



 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 343 QSKDSRLSNKRSRKTHRKRIRKAYKQRSSESRWRPHK 453
           +S DS     R  K H K  +   K+RS   R + HK
Sbjct: 72  ESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHK 108


>At3g02710.1 68416.m00262 nuclear associated protein-related /
           NAP-related similar to Nuclear associated protein (NAP)
           (NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
          Length = 529

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 404 EKLTNNDLQNLDGAPIKNVVLSFKRQVKKTL 496
           EK ++N ++ LD   +K +VLSF+R+++  +
Sbjct: 39  EKSSHNGVEALDLKTLKKLVLSFERRLRDNI 69


>At2g38750.1 68415.m04758 annexin 4 (ANN4) nearly identical to
           annexin (AnnAt4) [Arabidopsis thaliana] GI:6503084;
           contains Pfam profile PF00191: Annexin
          Length = 319

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 373 RSRKTHRKRIRKAYKQRSSESRWRPHKKC 459
           +S+K HRK  RKA K    E   R  +KC
Sbjct: 33  KSQKEHRKLFRKASKSFFVEDEERAFEKC 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,048,717
Number of Sequences: 28952
Number of extensions: 224732
Number of successful extensions: 588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)