Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11c19
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0) 64 1e-10
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 30 2.3
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 4.1
SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 28 7.1
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_1227| Best HMM Match : Aldose_epim (HMM E-Value=0)
Length = 326
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = +1
Query: 481 FQPRNPYFGATIGRYANIIRDATMVVRPSGRMYMLSNNKXXXXXXXXXXXFDKVNWHSYV 660
F+ PYFG+TIGR AN I +A + G+ Y L+ N F+KV W S +
Sbjct: 103 FEDNPPYFGSTIGRVANRIANAEFTL--DGKTYHLAKNNGPNCLHGGLIGFNKVLWQSSI 160
Query: 661 NGNQVIMSHVSERFHEGYPGTVMAQITFEVT 753
+ V MS+ S EG+PG V +T+ +T
Sbjct: 161 EEDHVKMSYTSHDGEEGFPGKVKVTVTYSLT 191
>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +1
Query: 43 KYISF*NSKFPVKMAEEGDEKASGDVE-EDTKTVTPQ-PEPKIPDVELIVDGFGLMPKSM 216
K + NS+F ++ K++ D E T ++ + E K+ + + + L
Sbjct: 667 KELQLANSRFSDLESDLAQAKSAADTHREKTNSLQKELAEAKLSESKALRKVSSLEETLS 726
Query: 217 KVPKNRTSNAFEESKQMLKEIKVTNEEAKSPCSSSTNIEVVRRYTWRTKNRMSVQIISYG 396
K P N SNA E+ +Q+ KE+ + E K ++ T +E + + + ++ +
Sbjct: 727 KAPAN--SNASEKLEQLEKELLESRENEKKSSAAVTRLEGLEKNLSSIREELATKEKDMA 784
Query: 397 ATITSI 414
+T+ +
Sbjct: 785 STVQQL 790
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 73 PVKMAEEGDEKASGDVEEDTKTVTPQPEPKIP--DVELIVDGFGLMPKSMKVPKNRTSNA 246
P++ AE DE+ VEE P+ E K P +VE V+ + +VP
Sbjct: 1131 PIEEAEAPDERVESSVEE---AEAPEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQ 1187
Query: 247 FEESKQMLKEIKVTNEEAKSP 309
E+++ +++ + + ++A++P
Sbjct: 1188 AEDTEGPVEDAEASVQKAEAP 1208
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +1
Query: 67 KFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNA 246
K P++ AE +KA VEE P + +VE K + P
Sbjct: 688 KAPIQEAEASVKKAEATVEE-----IEAPIERAKEVEAQSKEVDAPVKEAEAPAGEAEAP 742
Query: 247 FEESKQMLKEIKVTNEEAKSP 309
EES+ ++++ + + EEA+ P
Sbjct: 743 VEESEVLVEKAEASVEEAEVP 763
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 NSKFPVKMAEEGDEKASG-DVEEDTKTVTPQPEPKIPDV 174
N+ P E ++ SG DV + K+ PQPE IP+V
Sbjct: 304 NTDVPEATKPENKQQTSGIDVAKSRKSEVPQPEVSIPEV 342
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 79 KMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEES 258
KM +E +EK D++ DT+ E KI D+E ++ L + K A E
Sbjct: 913 KMRKETEEKFKTDLQ-DTELKLKDAEAKIKDLETQLEQAKLHAEQFKSMSGANDEALREV 971
Query: 259 KQMLKEIKVTNE 294
+ +E K E
Sbjct: 972 NKSTEEFKSNME 983
>SB_51382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 341 LTTSMLVLEEQGLLASS-FVTFISFNICFDSSKAFEVRFLGTFIDLG--INPNPSTINST 171
+TT LV+ L+ ++ + +FNIC+D++ F+ TF D N N T N
Sbjct: 22 MTTPTLVMTTPSLVMTTPSLVMTTFNICYDNANTFDDN-SNTFNDNSNTFNDNSITFNDN 80
Query: 170 S 168
S
Sbjct: 81 S 81
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 88 EEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVD 189
EE +E+ +V+ + T P P+P P+ + +VD
Sbjct: 356 EEEEEEEEEEVDREAVTPPPPPQPPPPNEQQVVD 389
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 61 NSKFPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVE 177
+SK P E + G+ E + + V EPK PD E
Sbjct: 279 SSKAPETQVSESMQMTQGEAEAEPQRVAEIKEPKTPDFE 317
>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 525 RKHHSGCHNGGAAFGKNVHAV--KQQRPSPLP 614
RK GC N F N+H V +QR P P
Sbjct: 890 RKQRKGCENAIEPFSVNIHFVTSNEQRKHPFP 921
>SB_37594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 216 EGTQKPHLKCLRRIKANVKRNKSYE*RSQKSLLLQY 323
+G K HLKC R K +K++ Y+ R QK + Q+
Sbjct: 38 KGPIKQHLKCDREQKGPIKQHLKYD-REQKGPIKQH 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,517,746
Number of Sequences: 59808
Number of extensions: 432128
Number of successful extensions: 1103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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