Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c19
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil...    63   2e-10
At3g47800.1 68416.m05207 aldose 1-epimerase family protein simil...    60   2e-09
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil...    51   7e-07
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s...    30   1.9  
At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2) i...    28   5.8  
At5g55640.1 68418.m06938 expressed protein                             28   7.7  
At2g24080.1 68415.m02876 F-box family protein-related similar to...    28   7.7  

>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 341

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
 Frame = +1

Query: 370 MSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIRDAT 549
           M V+I +YG TITS+              GFD+++ Y +   PYFG  +GR AN I++  
Sbjct: 19  MQVKISNYGTTITSLSVPDKNGKLGDVVLGFDSVDPYVKGLAPYFGCIVGRVANRIKEGK 78

Query: 550 MVVRPSGRMYMLSNNKXXXXXXXXXXXFDKVNWHSYVNGNQVIMSHVSERFH-----EGY 714
             +  +G  Y L  NK           FDK  W    +        ++ ++H     EGY
Sbjct: 79  FSL--NGVNYTLPINKPPNSLHGGNKGFDKKIWEVAGHKRDGEKPFITFKYHSADGEEGY 136

Query: 715 PGTVMAQITFEVT 753
           PG V    T+ +T
Sbjct: 137 PGAVSVTATYTLT 149


>At3g47800.1 68416.m05207 aldose 1-epimerase family protein similar
           to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
           from [Acinetobacter calcoaceticus]; contains Pfam
           profile PF01263 Aldose 1-epimerase
          Length = 358

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
 Frame = +1

Query: 310 CSSSTNI-EVVRRYTWRTKNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQ 486
           CS + ++ E ++ Y   T+  +SV   +YGA +TS+              GFDT++ Y +
Sbjct: 21  CSVNYSLCEKIKTYKL-TRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLGFDTVDGY-K 78

Query: 487 PRNPYFGATIGRYANIIRDATMVVRPSGRMYMLSNNKXXXXXXXXXXXFDKVNW--HSYV 660
               YFGA +GR AN I  A    + +G +Y    N+           F  V W    YV
Sbjct: 79  NDTTYFGAIVGRVANRIGGAKF--KLNGHLYKTDPNEGRNTLHGGSKGFSDVIWSVQKYV 136

Query: 661 NGNQVIMSHVSERFHEGYPGTVMAQITF 744
             + +  ++ S    EG+PG V  ++T+
Sbjct: 137 PTSHITFTYDSFDGEEGFPGNVTVKVTY 164


>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
           to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
           (Mutarotase) from Acinetobacter calcoaceticus; contains
           Pfam profile PF01263 Aldose 1-epimerase
          Length = 490

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
 Frame = +1

Query: 361 KNRMSVQIISYGATITSIQXXXXXXXXXXXXAGFDTLEEYFQPRNPYFGATIGRYANIIR 540
           K  ++V+  ++GA+I S+              G+D+++ Y +    YFGAT+GR AN I 
Sbjct: 167 KGNLTVKFTNWGASIISLHFPDKNGKMDDIVLGYDSVKTY-KTDKVYFGATVGRVANRIG 225

Query: 541 DATMVVRPSGRMYMLSNNKXXXXXXXXXXXFDKVNW----HSYVNGN-QVIMSHVSERFH 705
                 + +G+ Y  S N            F  V W    H Y      ++ +H S    
Sbjct: 226 KGKF--KLNGKEYKTSVNDGKNTLHGGKKGFGDVVWAVAKHQYDGKKPHIVFTHTSPDGD 283

Query: 706 EGYPGTVMAQITFEV 750
           +G+PG +   +T+++
Sbjct: 284 QGFPGELSVTVTYKL 298


>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
           similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
           substrate 1 [Arabidopsis thaliana]
          Length = 442

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +1

Query: 94  GDEKA-SGDVEED--TKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAFEESKQ 264
           G EK  +GD++ D   + V+P P+P++P   + V        S + P  R+ +++  S+ 
Sbjct: 79  GAEKYFNGDMDSDHSPRLVSPLPDPEVPIERIFVGPKQSSKNSSETPSLRSESSW-NSQS 137

Query: 265 MLKEIKVTNEEAKSPCSSSTN 327
           +L + K   ++     +SS N
Sbjct: 138 LLLQSKYVEKKKNIKKNSSCN 158


>At2g33290.1 68415.m04080 SET domain-containing protein (SUVH2)
           identical to SUVH2 [Arabidopsis thaliana] GI:13517745;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH2 (SUVH2)  GI:13517744
          Length = 651

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 496 PYFGATIGRYANIIRDATMVVRPSGRM-YMLSNNK 597
           P  G+ + R+A  +R+   +VRP+G + + LSN K
Sbjct: 359 PMMGSAVMRFAQTLRNKPSMVRPTGYVSFDLSNKK 393


>At5g55640.1 68418.m06938 expressed protein
          Length = 149

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +1

Query: 70  FPVKMAEEGDEKASGDVEEDTKTVTPQPEPKIPDVELIVDGFGLMPKSMKVPKNRTSNAF 249
           F +   E  ++K + + + + +T  P       +  + +   G  P  ++   + TS+  
Sbjct: 24  FVIPSLEIEEDKVNNNNDSEVETSKPSSPKSKAEENIYLGPHGAPPSQLQDGGSNTSSRK 83

Query: 250 EESKQMLKE 276
           +  KQMLKE
Sbjct: 84  QRFKQMLKE 92


>At2g24080.1 68415.m02876 F-box family protein-related similar to
           F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 73  PVKMAEEGDEKASGDVEEDTKTVTPQPEPKI 165
           P  +AE G+ K SG  + + +  TP+ +PK+
Sbjct: 8   PASVAEVGNSKRSGSPKYNERAKTPRLDPKL 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,574
Number of Sequences: 28952
Number of extensions: 317543
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)