Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c17
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    31   0.16 
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      29   0.87 
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   2.0  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   6.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   8.1  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   8.1  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 IVCARLQFLRKLKTLRDSEDTRPRIYLDETWVNQNHSRKRI 669
           I+CAR  FLRKL   +        IY++E  + Q+HS  R+
Sbjct: 636 ILCARSSFLRKLLLQKKKSSVSNIIYIEE--ITQSHSTIRV 674


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 262 NECVKGEVSSPRESINRPCTVTALDDFDKSVIKQIVSSFYC-DGEYPSTAKILS 420
           +E  +  VSSP +++    + +  D   K ++ ++ S  Y  D E+PS+ + L+
Sbjct: 88  DELSRSNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDDDEFPSSPEELN 141


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 565 QFLRKLKTLRDSEDTRPRIYLDET 636
           +F+RKL  L DSED R R +L  T
Sbjct: 241 KFIRKLLVLFDSEDPRERDFLKTT 264


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 541 TDIVCARLQFLRKLKTLRDSEDTRPRIYL 627
           T  +CA L FLR LK     +DT   ++L
Sbjct: 450 TAFLCALLNFLRYLKYRNSKKDTELSLFL 478


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 248 TVLTLTPHIAAASSRERQKLTLFNFLGSIFISVKKIKTLLITTRAC 111
           T+ T  P  A+ +S E+QK  L N   S  + + K    LI  + C
Sbjct: 112 TIATPVPDAASRASLEKQKSGLTNLEKSTHVVLIKCIEQLIQIKVC 157


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 317 QGRLMLSRGELTSPFTHSFL-ILSTVLTL 234
           Q RLM SR +  S FTHS+L  LS ++ L
Sbjct: 522 QERLMDSRIDAISKFTHSYLKSLSEIILL 550


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 433 RIDGFQCSITSMRKILIELGYKYIQASYGRKQLMERTDIVCARL 564
           R DG    I  +R  +I+ G + I  SY R  L +    VC +L
Sbjct: 350 RFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRD----VCIKL 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,358
Number of Sequences: 5004
Number of extensions: 59868
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)