Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c17
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641...    29   3.6  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    28   6.4  
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    28   8.4  
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     28   8.4  
01_03_0020 - 11698429-11699126,11699557-11700532                       28   8.4  

>04_01_0487 +
           6406826-6407086,6413538-6413996,6414401-6414570,
           6415146-6415175,6415777-6415939,6416020-6417132
          Length = 731

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 146 KIKTLLITTRACAYY*NALNLLWVQIFVRSLQKCFNSHDPMA 21
           K++   I  R CA Y +A +L+ +   V  + KCF   D +A
Sbjct: 114 KLQNSTIDPRVCAIYKDASDLVGIHEPVEDIIKCFTYEDELA 155


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 415 LSRATER-IDGFQCSITSMRKILIELGYKYIQASYGRKQLMERTDIV 552
           LSR TE  I      IT+  K L+EL  +  Q +   K+ ME TD++
Sbjct: 242 LSRKTETLIANLSHQITAKSKYLVELECRCNQMNLSVKRAMEETDLL 288


>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 109 AQARVVINNVLIFFTEMKIDPKKLKS 186
           A  ++  NN L+F  ++K D KK+K+
Sbjct: 92  AMKKIEDNNTLVFIVDLKADKKKIKA 117


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 109 AQARVVINNVLIFFTEMKIDPKKLKS 186
           A  ++  NN L+F  ++K D KK+K+
Sbjct: 82  AMKKIEDNNTLVFIVDLKADKKKIKA 107


>01_03_0020 - 11698429-11699126,11699557-11700532
          Length = 557

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 634 SHLNKFLVECLHYLSGS*VFSGIVAAHKRCQSFPSIVYDHM 512
           ++ NKFL     YLSG  + +G VAA + CQ    +  D +
Sbjct: 75  ANANKFLSLVNRYLSGGRLAAGAVAALQDCQLLSGLNIDFL 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,883
Number of Sequences: 37544
Number of extensions: 342799
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)