Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c17
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41182| Best HMM Match : PAN (HMM E-Value=0.00063)                   28   6.5  
SB_35886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_41182| Best HMM Match : PAN (HMM E-Value=0.00063)
          Length = 258

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 595 DSEDTRPRIYLDETWVNQNHSRKRIWLDKDGQGG 696
           D    RP +     W+N    R+R++ D D  GG
Sbjct: 132 DLRKVRPSLASGYYWINTKRKRRRVYCDMDRFGG 165


>SB_35886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 682 PCLAKFVCGCDFGSPKSHLNKFLVEC 605
           PC  K  C C  GS ++ LN  L+EC
Sbjct: 341 PCNKKINCQCICGSNEASLNDSLLEC 366


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -2

Query: 446 NPSILSVALLKILAVEGYSPSQ*NDDTICLITLLSKSSNAVTVQGRL-MLSRGELTSPFT 270
           NPSIL+  + + L+    S +  + D    +T L +   AV  QG L MLS+G++    T
Sbjct: 268 NPSILATGVTEKLS----SVALLSADNANTVTELWEKIRAVADQGGLVMLSKGQVEDVNT 323

Query: 269 HSFLILSTVLTLTPHIAAASSRER 198
            +   +STV+   P   A ++  R
Sbjct: 324 LAVDFVSTVVNTIPVANAVATGAR 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,681,894
Number of Sequences: 59808
Number of extensions: 436638
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)