Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c16
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.96 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 135 TLNPGLKNVSQKPLVPSEKKFLPPLT*GWDSRKTISKINI-NE*FQYLKTKIPRISDAKL 311
           T+NP L N+       + K  LP     W S+K+  + +I +   +Y ++   +  D + 
Sbjct: 342 TVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSSLLRYPRSIFRQTDDHQN 401

Query: 312 KEEIFV--DQQILT 347
              IF+  D Q LT
Sbjct: 402 SPSIFISDDNQKLT 415


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 30  YLC*FKSRRYTHRITMRVHKVLPFSL*VGQSRKIKTL--NPGLKNV 161
           Y+C F +RRY  + ++  HK L      G S  +K L     +KNV
Sbjct: 36  YVCEFCNRRYRTKNSLTTHKSLQHR---GSSGMLKRLLKTTAIKNV 78


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 349 ELMKDENFNSKLNEAEKRAWAAFVKVCH 432
           E  +D++FN++ +++EKR      +V H
Sbjct: 62  EKSEDDSFNNQADKSEKRIPLYVCRVLH 89


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 YKALGCNMSLKIYFSDSLLDLFP 564
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIP 118


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 YKALGCNMSLKIYFSDSLLDLFP 564
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYKKLYYNINYIEQIP 118


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 496 YKALGCNMSLKIYFSDSLLDLFP 564
           YK L CN   K+Y++ + ++  P
Sbjct: 96  YKKLYCNNYRKLYYNINYIEQIP 118


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 646 SHCSVFQCALYPDE 605
           S C + QCA  PDE
Sbjct: 54  SACGIVQCAKGPDE 67


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 114 GQSRKIKTLNPGLKNVSQKP 173
           G  RK+K L+P +K ++  P
Sbjct: 222 GIGRKLKELSPNIKIIAVDP 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,804
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)