Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c14
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   2.2  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   5.2  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   5.2  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    26   6.9  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   6.9  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.1  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   9.1  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   9.1  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 27/114 (23%), Positives = 52/114 (45%)
 Frame = -2

Query: 404 KELQH*VYRHPILVDLILFSCCLHTLLASDQNT*LLAFVSVMLLPAVDFVSKSRSNSAAF 225
           K+L    ++ P+L+  ++    L T + + +NT LL  V   ++ AV +      N++A 
Sbjct: 553 KQLVEINFKDPMLITRLISVLVLFTSILARENTTLLGVVLEKIISAVTY-----DNTSA- 606

Query: 224 LKTFSSSLIPSLEAMRCKVLLYFAIIAPFILLSSTLKNILYILEKFYDHNQNNT 63
             ++  S +  +  MR +    F ++    L+ + L NI   L+   D   N T
Sbjct: 607 --SYGFSDVQKINEMRSRCC--FELVRLGELMPNPLMNIFDQLQSIIDQLDNAT 656


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +2

Query: 332 YANSKKIISNRLELDVDRLSVAVLCASLQNSGVQALAEKILEQYKQYSKVELDMSLPQYV 511
           ++N     +++ +  V RL V     S ++S  + +  ++L+QY+  + ++LD   P+ V
Sbjct: 316 FSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVV 375


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 659 KRGKKEVKNSIENVEENVPMEVDSSK 736
           KR      N +EN+++ +P EVD+ K
Sbjct: 403 KRNYTITNNWLENLQQKIPSEVDNGK 428


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 169 TLHLIASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTKA 297
           T H  A+   I  EE   +   EF+  +  K  +G ++ D+KA
Sbjct: 171 TCHTFAAGYDIRTEESYKKVIDEFDEKVGAKYVSGWHLNDSKA 213


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 290 VSVMLLPAVDFVSKSRSNSAAFLKTFSSSLIPSLEAMRCKVLLYFAII 147
           + V L+P ++   K++    A     S  + P L A RCK  L  ++I
Sbjct: 178 IHVSLVPVINGEQKTKPTQQAIRDLRSLGITPDLIACRCKQPLEKSVI 225


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 671 KEVKNSIENVEENVPMEVDSSKQE-EPIETFEP 766
           KE+ +S+EN EE+   E  SSK + E   + EP
Sbjct: 87  KELNSSLENDEESSQQEDSSSKSDSEEESSMEP 119


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 365  LELDVDRLSVAVLCASLQNSGVQALAEKILEQYKQYSKVELDMSLP 502
            +E+D D L        L+N G +++A  + E+ ++YS+ ELD   P
Sbjct: 984  VEVDYDELD-----EELRNDGSESMASVLQEKLREYSE-ELDQMSP 1023


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 653 VKKRGKKEVKNSIENVEENVPMEVDSSKQEEPIE 754
           VK++ +K +KN  + + E +P + D  +QEE  E
Sbjct: 18  VKEKRQKPLKND-KKIAEELPQDEDDYEQEEENE 50


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 632 FADTHFAVKKRGKKEVKNSIENVEENVPMEVDSSKQEE 745
           F D    +K   +K V NS+E + +N  +  D   +EE
Sbjct: 100 FTDVDMFLKYHREKNVLNSLEALVQNTQIAFDQYLEEE 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,108
Number of Sequences: 5004
Number of extensions: 49691
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)