Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c14
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_44717| Best HMM Match : 7tm_1 (HMM E-Value=0.001)                   30   1.8  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              30   2.4  
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)             29   3.1  
SB_17680| Best HMM Match : bZIP_1 (HMM E-Value=8.2)                    29   4.2  
SB_32550| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.73)           29   5.5  
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   28   9.6  

>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1558

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +1

Query: 139 NGAIMAKYNKTLHLIASKLGISDEEKVLRKAAEFERLLETKS 264
           N  I+ K +KTL  + ++LG ++EE++++ +A   R L  ++
Sbjct: 874 NKTILCKMDKTLEALIAQLGTTEEEEIVQVSASILRNLSWRA 915


>SB_44717| Best HMM Match : 7tm_1 (HMM E-Value=0.001)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = -2

Query: 485 ILLYCTACTAQVFSQLAPEHHCFVS*HKELQH*VYRHPI-LVDLILFSCCLHTLLASDQN 309
           I L+C  C  +VFS        F    +++Q      P   +D  L +  L++L  ++  
Sbjct: 41  IALFCRVC--RVFSGRNGRQRSFTLAVRQVQVNQRGKPKRAMDRNLTTTFLYSLTLNNVL 98

Query: 308 T*LLAFVSVMLLPAVDFVSKSRSNSAAFLKTFSSSLIPSLEAMRCKVLLYFAIIAPFILL 129
           T + A V   L   VD  +   S  A    T++ SLI  +  +   V  YF+I+ P  L 
Sbjct: 99  TAVSAPVINGLQTYVDMFTSDWSCRALRFTTYTISLIKMINIVVISVEKYFSILYPMKLS 158

Query: 128 SSTL 117
           SS+L
Sbjct: 159 SSSL 162


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 175 HLIASKLGI---SDEEKVLRKAAEFERLLETKSTAGSNITDT 291
           H IA K  +   S + KVLRKA +   +LE KS A S++++T
Sbjct: 203 HSIAGKRNVYSFSKKSKVLRKATKPGIILEVKSKATSSVSNT 244


>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +2

Query: 629 QFADTHFAVKKRGKKEVKNSIENVEENVPMEVDSSKQEEPIETFE 763
           Q  D + AV  R KK V +S +N E     E+D  KQ  PIET+E
Sbjct: 315 QVKDENKAVNFRDKKPV-SSTKNGEGKTA-EMDYKKQYRPIETYE 357


>SB_17680| Best HMM Match : bZIP_1 (HMM E-Value=8.2)
          Length = 92

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 127 DSKINGAIMAKYNKTLHLIASKLGISDEEKVLRKAAEFERLLETKSTA 270
           DSK++ A+MA+Y + L ++AS +  S  E  LR+  E    L  K+ A
Sbjct: 14  DSKVS-AVMAEYEERLDMLASNM--SQVESELREEREHSSSLREKNEA 58


>SB_32550| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.73)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +1

Query: 73  WL*S*NFSKIYNIFFNVEDSKINGAIMAKYNKTLHLIASKLGISDEEKVLRKAAEFERLL 252
           WL    F  I ++F NV D+    +I     +  +LIA  LG+  E  +LR   + E  L
Sbjct: 213 WLWVFVFMGIKDMFGNVRDAGYGLSIAQSGRQVAYLIAGMLGVRLEAVLLRHCRD-ELFL 271

Query: 253 ETKSTAGSNITDTKAS 300
                + SN  D  A+
Sbjct: 272 GEYCLSRSNADDNMAA 287


>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 587 LKPAQW-NKLEADWSQFADTHFAVKK 661
           LK A+W N  +A+W  F+D H  ++K
Sbjct: 241 LKFAKWTNSYKANWGAFSDVHSGIQK 266


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 587 LKPAQW-NKLEADWSQFADTHFAVKK 661
           LK A+W N  +A+W  F+D H  ++K
Sbjct: 187 LKFAKWTNSYKANWGAFSDVHSGIQK 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,035,862
Number of Sequences: 59808
Number of extensions: 321018
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)