Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11c14
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 34 0.13
U80027-10|AAC48118.3| 295|Caenorhabditis elegans Serpentine rec... 31 0.91
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein. 28 6.4
Z66495-13|CAA91278.1| 722|Caenorhabditis elegans Hypothetical p... 28 8.5
Z35602-3|CAA84672.1| 722|Caenorhabditis elegans Hypothetical pr... 28 8.5
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 184 ASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEANSVCKQQENN 354
+SK +D+EK+ R AEFER + K S + +T SN + E++ NN
Sbjct: 1410 SSKKPKNDDEKIRRGIAEFERTKQEKEAQRSTVIETSQSNSRIFEESSISMDDVFNN 1466
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 205 DEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
D+EK+ R AEFER + K S + +T SN + ++N
Sbjct: 1743 DDEKIRRGIAEFERTKQEKEAQRSAVIETSQSNKHIFDKSN 1783
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 115 FNVEDSKINGAIMAKYNKTLHLIASKLGISDE--EKVLRKAAEFERLLETKSTAGSNITD 288
++V+ A+ +K + + +S+E EK+ R AEFER + K S + +
Sbjct: 1548 YSVKMENRTSAVSIDLDKVFDQSSKETTVSNETDEKIKRGIAEFERSKQEKEVQRSGVAE 1607
Query: 289 TKASN*VFWSEAN 327
T S + E+N
Sbjct: 1608 TSHSGKHIFDESN 1620
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 205 DEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
D+EK+ R AEFER + K S + +T+ S+ ++E++
Sbjct: 2106 DDEKIRRGIAEFERTKQEKEAQRSTVIETQYSSKDMFNESD 2146
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 208 EEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
+EK+ R AEFER + K S + +T S+ + E+N
Sbjct: 1944 DEKIKRGIAEFERSKQEKEVQRSGVAETSHSSKHIFDESN 1983
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 208 EEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
+EK+ R AEFER + K S + +T S + E+N
Sbjct: 1257 DEKIKRGIAEFERSKQEKEVQRSGVAETSHSGKHIFDESN 1296
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 184 ASKLGISDEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEANSVCKQQENN 354
+SK +D+EK+ R AEFER + K S + +T SN + E++ NN
Sbjct: 1410 SSKKPKNDDEKIRRGIAEFERTKQEKEAQRSTVIETSQSNSRIFEESSISMDDVFNN 1466
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 205 DEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
D+EK+ R AEFER + K S + +T SN + ++N
Sbjct: 1743 DDEKIRRGIAEFERTKQEKEAQRSAVIETSQSNKHIFDKSN 1783
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 115 FNVEDSKINGAIMAKYNKTLHLIASKLGISDE--EKVLRKAAEFERLLETKSTAGSNITD 288
++V+ A+ +K + + +S+E EK+ R AEFER + K S + +
Sbjct: 1548 YSVKMENRTSAVSIDLDKVFDQSSKETTVSNETDEKIKRGIAEFERSKQEKEVQRSGVAE 1607
Query: 289 TKASN*VFWSEAN 327
T S + E+N
Sbjct: 1608 TSHSGKHIFDESN 1620
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 205 DEEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
D+EK+ R AEFER + K S + +T+ S+ ++E++
Sbjct: 2106 DDEKIRRGIAEFERTKQEKEAQRSTVIETQYSSKDMFNESD 2146
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 208 EEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
+EK+ R AEFER + K S + +T S+ + E+N
Sbjct: 1944 DEKIKRGIAEFERSKQEKEVQRSGVAETSHSSKHIFDESN 1983
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 208 EEKVLRKAAEFERLLETKSTAGSNITDTKASN*VFWSEAN 327
+EK+ R AEFER + K S + +T S + E+N
Sbjct: 1257 DEKIKRGIAEFERSKQEKEVQRSGVAETSHSGKHIFDESN 1296
>U80027-10|AAC48118.3| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 5 protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 354 IIFLLFAYTVGLRPEYLIACFCISNVAASRRFC 256
II LLFA T+G+ ++ FC N++A R C
Sbjct: 132 IIILLFAITMGMFENLILYIFCSINISAIPRDC 164
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 575 EKARLKPAQWNKLEADWSQFADTHFAVKKRGKKEVK-NSIENVEENVPMEVDSSKQE 742
E+ + A+ N + + A+ KKRGKK+VK EN EEN+ +++ +E
Sbjct: 613 EQMEKEMAEMNDQNDNTEEDAEKKKKKKKRGKKKVKLTETENPEENMTEAIENEVEE 669
>Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical
protein F53A2.4 protein.
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 668 KKEVKNSIENVEENVPMEVDSSKQEE 745
K++ KNS+EN+E+ V E ++SK E
Sbjct: 114 KEQAKNSVENLEKFVDNEGETSKDAE 139
>AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein.
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 668 KKEVKNSIENVEENVPMEVDSSKQEE 745
K++ KNS+EN+E+ V E ++SK E
Sbjct: 114 KEQAKNSVENLEKFVDNEGETSKDAE 139
>Z66495-13|CAA91278.1| 722|Caenorhabditis elegans Hypothetical
protein R13G10.4 protein.
Length = 722
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 335 ANSKKIISNRLELDVDRLSVAVLCASLQNSGVQALAEKILEQYKQYSKVELDMSLPQYVC 514
A S K+ L D + A C S V + + E Y Y+ + + LP V
Sbjct: 45 AFSFKLFGKNLAEDGYYFTTATRCEDSHLSTVSTVRATVKESYCSYAILSVPEGLPFNVS 104
Query: 515 MAVYQAC 535
+VY C
Sbjct: 105 TSVYHLC 111
>Z35602-3|CAA84672.1| 722|Caenorhabditis elegans Hypothetical
protein R13G10.4 protein.
Length = 722
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 335 ANSKKIISNRLELDVDRLSVAVLCASLQNSGVQALAEKILEQYKQYSKVELDMSLPQYVC 514
A S K+ L D + A C S V + + E Y Y+ + + LP V
Sbjct: 45 AFSFKLFGKNLAEDGYYFTTATRCEDSHLSTVSTVRATVKESYCSYAILSVPEGLPFNVS 104
Query: 515 MAVYQAC 535
+VY C
Sbjct: 105 TSVYHLC 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,688
Number of Sequences: 27780
Number of extensions: 263526
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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