Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c13
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   4.0  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   4.0  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   7.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.3  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   9.3  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -2

Query: 507 PAVNNWRSLALLQKTG-----RPLAPSTTQVNKASSPLFTVTPPPGARIQ 373
           PA  ++ S+ + Q +      +P APST Q N + SP     PP  A ++
Sbjct: 295 PAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVK 344


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 331 VYGQLSRRCRAQRSLDASSGRRRN 402
           +YG  SRR  +QRS ++S+G+R N
Sbjct: 708 MYGD-SRRSNSQRSFNSSNGKRSN 730


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 614 VIKSVKPSDAGLYMCELNTEPPVRSFHRLTVISRGLTPPENRNITD 751
           +++ +  SD+     + N   P R   +   ISRG    ENR IT+
Sbjct: 16  ILEEIGESDSSARRGKRNHNLPHREKRKFARISRGKNGYENRKITE 61


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 450 APSTTQVNKASSPLFTVTPPPGARIQASLGSTSS 349
           +PSTT V+ AS+    + P      + S+ STSS
Sbjct: 217 SPSTTNVSNASTSSAPINPRAPQTRRESISSTSS 250


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 298 RTQNFSGEYKYVYGQLSRRCRAQRSLDASSGRR 396
           R +   G+YK V  ++ +  RAQ+ L A  GRR
Sbjct: 771 RPKGVKGKYKMVDSRMKKDLRAQKRL-AKKGRR 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,907
Number of Sequences: 5004
Number of extensions: 58904
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)