Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c13
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0123 - 8677781-8677968,8681835-8682084                           31   1.4  
04_04_0500 - 25677767-25680850                                         28   9.6  
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    28   9.6  
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139           28   9.6  

>05_03_0123 - 8677781-8677968,8681835-8682084
          Length = 145

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 362 PKEAWMRAPGGGVTVKSGEDALLTCVVLGARGRPVFWRRARDLQLLTAGAVRVTRDDRIQ 541
           P  A  RA GGG  V S    +  C+V    G  VF  R   + +L  G   + R+ RI 
Sbjct: 42  PVPARGRAGGGGPAVGSRPARIAECLVGDETGVIVFTARNEQVDMLMPGNTAILRNARID 101

Query: 542 V 544
           +
Sbjct: 102 M 102


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 313 SGEYKYVYGQLSRRCRAQRSLDASSGRRRNSKEWR 417
           +  Y  +   LSR C A+   DAS  R R+S+  R
Sbjct: 42  ASSYASLLSSLSRECHARHPFDASPPRARHSQTCR 76


>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
            16854394-16854521,16855016-16855067,16855182-16855274,
            16855473-16855590,16856456-16856609,16857512-16857643,
            16859136-16859216,16859353-16859507,16860118-16860343,
            16860423-16860507,16860593-16860689,16861785-16861949,
            16862046-16862121,16863041-16863103,16863193-16863359,
            16863495-16863669,16863743-16863835,16864694-16864810,
            16865589-16865778,16866092-16866126
          Length = 1618

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 312  QWRIQVRLRTALKKMSSPKKPGC 380
            +W   V++RT L+ +++ K+PGC
Sbjct: 1529 KWEDVVKVRTRLRSINAKKEPGC 1551


>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
          Length = 172

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 15  RPRVEHARSGPAARRVASSVRPSIVSLLLPV 107
           RPR+ H R+   A  +AS  RP + +L+L V
Sbjct: 137 RPRLLHLRADVCAAALASPCRPPVPALVLAV 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,854,053
Number of Sequences: 37544
Number of extensions: 459338
Number of successful extensions: 1366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)