Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c13
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    31   0.016
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    31   0.016
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.45 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 29/96 (30%), Positives = 41/96 (42%)
 Frame = +2

Query: 374  WMRAPGGGVTVKSGEDALLTCVVLGARGRPVFWRRARDLQLLTAGAVRVTRDDRIQVLHD 553
            +  AP   VTVK G+ A L C V G     V W +   ++L  +   RVT   + +V  D
Sbjct: 809  YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVT--VKREVTPD 866

Query: 554  DSEEPLQGPGIKKGGDVWALVIKSVKPSDAGLYMCE 661
                          G +  L I S + SD+G Y C+
Sbjct: 867  --------------GVIAQLQISSAEASDSGAYFCQ 888



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
 Frame = +2

Query: 398 VTVKSGEDALLTCVVLGARGRPVFWRRA-RDL------QLLTAGAVRVTRDDR--IQVLH 550
           VT  +GE   L C V G     + W RA R+L      ++L  G + +T   +     ++
Sbjct: 528 VTAVAGETLRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVY 587

Query: 551 DDSEEPLQGPGIKKGGDVWALVIKSVKP 634
             S    QG   ++ GDV  +V   ++P
Sbjct: 588 TCSARNKQGHSARRSGDVAVIVPPIIEP 615


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 29/96 (30%), Positives = 41/96 (42%)
 Frame = +2

Query: 374  WMRAPGGGVTVKSGEDALLTCVVLGARGRPVFWRRARDLQLLTAGAVRVTRDDRIQVLHD 553
            +  AP   VTVK G+ A L C V G     V W +   ++L  +   RVT   + +V  D
Sbjct: 805  YFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVT--VKREVTPD 862

Query: 554  DSEEPLQGPGIKKGGDVWALVIKSVKPSDAGLYMCE 661
                          G +  L I S + SD+G Y C+
Sbjct: 863  --------------GVIAQLQISSAEASDSGAYFCQ 884



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
 Frame = +2

Query: 398 VTVKSGEDALLTCVVLGARGRPVFWRRA-RDL------QLLTAGAVRVTRDDR--IQVLH 550
           VT  +GE   L C V G     + W RA R+L      ++L  G + +T   +     ++
Sbjct: 528 VTAVAGETLRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVY 587

Query: 551 DDSEEPLQGPGIKKGGDVWALVIKSVKP--SDAGLYMCELNT 670
             S    QG   ++ GDV  +V   + P  +D  L++ E  T
Sbjct: 588 TCSARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTT 629


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 596 GDVWALVIKSVKPSDAGLYMCELNT 670
           G+   L+IK+V  +D G YMC+ ++
Sbjct: 454 GNGTKLIIKNVDYADTGAYMCQASS 478


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 662 LNTEPPVRSFHRLTVISRGLTPPENRNITDTYSAYTPTL 778
           +  EP  R FH+   ++  +    N+ + + Y    PTL
Sbjct: 39  ITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQPTL 77


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 659 ELNTEPPVRSFHRLTVISRGLTPPENRNITDTY----SAYTP 772
           E N + P  ++H+   +   + PPE    T T     SAYTP
Sbjct: 158 ERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTP 199


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 611 LVIKSVKPSDAGLYMCEL-NTEPPVRSFHRLTVISRGLTPPENR 739
           L I+SVK  D G+Y C + N +   ++   L +  R   PP+ R
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDQESAQATAELKLGGR-FEPPQIR 397



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 608  ALVIKSVKPSDAGLYMCEL-NTEPPVRSFHRLTVISRGLTPPENRNITDT 754
            +L IK V  +DAG Y C + NT       H+L V +    PP +  IT T
Sbjct: 1330 SLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHA----PPHSPQITLT 1375



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 611 LVIKSVKPSDAGLYMCELN 667
           L+I+  +  D+G Y+C +N
Sbjct: 272 LIIREARVEDSGKYLCIVN 290



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 401 TVKSGEDALLTCVVLGARGRPVFW 472
           T + GE A+L C   G +   + W
Sbjct: 787 TARRGEPAVLQCEAQGEKPIGILW 810


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 424 GIFATLYCYA 395
           GI+  LYCYA
Sbjct: 210 GIYCRLYCYA 219


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 359 EPKEAWMRAPGGGVTVKSGEDALLTCVVLGAR 454
           +P+ A  +   G V  K G DA L CV  G +
Sbjct: 270 KPQHARRKVLAGIVQTK-GSDAELICVTTGTK 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,744
Number of Sequences: 438
Number of extensions: 4255
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)