Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c13
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09970.1 68418.m01152 cytochrome P450 family protein                32   0.49 
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso...    30   2.0  
At1g79750.1 68414.m09304 malate oxidoreductase, putative similar...    30   2.0  
At4g04920.1 68417.m00715 expressed protein                             29   2.6  
At1g67040.1 68414.m07624 expressed protein ; expression supporte...    28   6.1  

>At5g09970.1 68418.m01152 cytochrome P450 family protein 
          Length = 536

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 374 WMRAPGGGVTVKSGEDALLTCVVLGARGRPVF 469
           W  A GGGV  K+G + L    + G RG PVF
Sbjct: 48  WALAGGGGVAWKNGRNRLGRVAIPGPRGIPVF 79


>At2g43420.1 68415.m05396 3-beta hydroxysteroid
           dehydrogenase/isomerase family protein contains Pfam
           profile PF01073 3-beta hydroxysteroid
           dehydrogenase/isomerase domain; similar to
           NAD(P)-dependent steroid dehydrogenase from Homo sapiens
           [SP|Q15738], Mus musculus [SP|Q9R1J0]
          Length = 561

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +2

Query: 413 GEDALLTCVVLGARGRPVFWRRARDLQLLTAGAVRVTRDDRIQVLHDDSEEPLQGPGIKK 592
           G+  L TCVVLG RG   F  R+   +LL  G   V   D    LH D  + L    +  
Sbjct: 8   GDSHLKTCVVLGGRG---FIGRSLVSRLLRLGNWTVRVADSGHTLHLDESDSLLEDALSS 64

Query: 593 G 595
           G
Sbjct: 65  G 65


>At1g79750.1 68414.m09304 malate oxidoreductase, putative similar to
           malate oxidoreductase (NADP-dependent malic enzyme)
           GB:P34105 (Populus balsamifera subsp. trichocarpa)
          Length = 646

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 414 PLFTVTPPPGARIQASLGSTSS*ELSVDVLVFSTEVLSSSVEXXXXXXXXXXXXKLHVVL 235
           P   +TPP   R+ +SLGS    + +  VL+ +T   SSS+E               V  
Sbjct: 27  PRTIITPPASLRVFSSLGSNQ--DPTGSVLIETTATSSSSLETSAADIVPKSTVSGGVQD 84

Query: 234 IFGEELRSQD 205
           ++GE+  ++D
Sbjct: 85  VYGEDAATED 94


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 641  AGLYMCELNTEPPVRSFHRLTVISRGLTPPENRNITDTYSAYTPTL 778
            AGL + EL   PP   +HR  +     + PE+  +TD  S  + +L
Sbjct: 1115 AGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMILTDDVSKLSNSL 1160


>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 7   SGGGRGLSTLAPVQPRVASRVQCA 78
           SG GRG S+++PV  R+ S   CA
Sbjct: 454 SGHGRGSSSMSPVSRRLDSEYSCA 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,704
Number of Sequences: 28952
Number of extensions: 335597
Number of successful extensions: 945
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)