Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c11
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27640.1 68416.m03452 transducin family protein / WD-40 repea...    32   0.40 
At5g41810.2 68418.m05091 expressed protein                             31   0.93 
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    31   0.93 
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof...    30   1.6  
At3g09010.1 68416.m01055 protein kinase family protein contains ...    29   2.8  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   8.7  
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ...    27   8.7  
At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin ...    27   8.7  

>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
           family protein contains seven WD-40 G-protein beta
           repeats; similar to RA-regulated nuclear
           matrix-associated protein (GI:14161320) {Homo sapiens}
          Length = 535

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 79  KQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKRE 258
           ++ +   SD +Y     M ++ + +  KKK   ++S SSLS+   +I E+     F    
Sbjct: 454 QKHSSLSSDDDYNNDQSMPIIRTPESQKKKTSSSSSLSSLSSEEDIICERTPETTFNSPS 513

Query: 259 AVAIP 273
           +V  P
Sbjct: 514 SVLNP 518


>At5g41810.2 68418.m05091 expressed protein
          Length = 279

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +1

Query: 91  DSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKW 237
           DS S  + +++ K+ + N+K   +KK +  T+N++LSN+++  T    W
Sbjct: 68  DSPSSSSLEMKKKLEIENTKKEEEKKKE--TNNNNLSNMKHKKTSSHVW 114


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 124 NKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVF-KKREAVAIPAYTALKPLK 300
           +K+GL+N+ D L   V  ATS         ++ EKPK      KR AV  P Y A + L 
Sbjct: 616 SKVGLINNTDDLSGPVSSATS--------LLVEEKPKLPTLDHKRSAVGTPDYLAPEILL 667

Query: 301 G 303
           G
Sbjct: 668 G 668


>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 564

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 250 KREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKKFSAFGTKSRRNIPG 429
           KR+ +  PA T  + +K      +   K+KV  K   +  P KK+K  A   K++   P 
Sbjct: 12  KRKEIEAPAPTKTEKVKA----PAEKVKEKVPAKKAKVQAPAKKEKVQAPAKKAKVQAPA 67

Query: 430 KT 435
           KT
Sbjct: 68  KT 69


>At3g09010.1 68416.m01055 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 393

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 299 KVVRVVTAVLANKKSRPKESQYIIRRKKRNFPHSAQNLDGTYRG 430
           KV    T   A K+   K+   ++RRK+ N    A    G YRG
Sbjct: 293 KVALFCTQAAAQKRPNMKQVMEMLRRKELNLNEDALTEPGVYRG 336


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 136  LVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKREA 261
            L  +KD L+KKV+E T  + L     V  E+ K +  KK ++
Sbjct: 890  LKEAKDMLEKKVEELTYRAQLEKRSRVDLEEEKNQEIKKLQS 931


>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 259

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 292 PLKGCPCGNSGPCKQKV-TPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRV 468
           PL   P G+  P    +  P  V  H P++++K   F  K +  +PG ++K   +     
Sbjct: 154 PLGEKPGGDDVPVVTTMPAPHSVEDHKPEEEEK-KGFMDKIKEKLPGHSKKPEDSQVVNT 212

Query: 469 TPNVKVIRP 495
           TP V+   P
Sbjct: 213 TPLVETATP 221


>At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin
           ERD10 (Low-temperature-induced protein LTI45)
           [Arabidopsis thaliana] SWISS-PROT:P42759
          Length = 260

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 292 PLKGCPCGNSGPCKQKV-TPKGVTIHYPQKKKKFSAFGTKSRRNIPGKTEKGPYAPNQRV 468
           PL   P G+  P    +  P  V  H P++++K   F  K +  +PG ++K   +     
Sbjct: 155 PLGEKPGGDDVPVVTTMPAPHSVEDHKPEEEEK-KGFMDKIKEKLPGHSKKPEDSQVVNT 213

Query: 469 TPNVKVIRP 495
           TP V+   P
Sbjct: 214 TPLVETATP 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,734
Number of Sequences: 28952
Number of extensions: 314589
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)