Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c09
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   3.0  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   5.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   7.0  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/54 (18%), Positives = 24/54 (44%)
 Frame = +1

Query: 424 STAEFLLQNMKKFPMEVSLWSKEENLAFIGATFIPWDPMFLSYLEKIYNCQEPP 585
           S+    ++ +++ P          ++  I A   P DP+ + +L  ++ C + P
Sbjct: 247 SSTRITMEQIREHPFLSCFVHPNISIPIISAPIQPIDPLIVQHLSLVFRCSDDP 300


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 733 FSQLDLLSKSEKPLLLYQTNTKALFGCLILP*VLLYLPQTHYILLLRLRAVALGNCRFFP 554
           F Q +  +K+E  LL+       L G    P  ++     H+  LL L+ + L  C+F P
Sbjct: 174 FLQWNFPNKNEAHLLVTSLLEYKLKGSYAAPHTIML----HFADLLNLKGITLMRCQFEP 229

Query: 553 NKTKT*D 533
            K    D
Sbjct: 230 KKLSAND 236


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 137 FYSRLSSKV*RVWLKADIWLLGVILQIYFLSNSKIRN 247
           FY    + V   W+ ++++L+G++L I  ++   I N
Sbjct: 786 FYKNFRTYVVLTWILSNLFLVGIVLSIPKINGISISN 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,491
Number of Sequences: 5004
Number of extensions: 61325
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)