Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c09
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238...    33   0.19 
09_04_0528 - 18348071-18348136,18348477-18351209                       29   4.2  
10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448...    28   7.3  
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    28   9.7  

>01_01_0292 -
           2387653-2387711,2388061-2388684,2388814-2389104,
           2389338-2389390,2390496-2390968,2391090-2391432,
           2391793-2391911,2392081-2392512,2392657-2392747,
           2392833-2392942,2393681-2393875,2394581-2394622,
           2395144-2395268,2395856-2395926,2396047-2396147
          Length = 1042

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
 Frame = +1

Query: 490 EENLAFIGATFIPWDPMFLSYLEKIYNCQEPPPV-TL-KEEYNV---FEE-GTAKLMAKL 651
           E  LA I +     DP F++  E +    EPP V TL  E+Y +    E     +++ + 
Sbjct: 532 ESELARIASKIQDMDPTFVNKAEAVQQTPEPPKVRTLTAEDYRISIGIERFRCPEILFQP 591

Query: 652 G-IQIKLSYLSDRVTVAFRTLTEDPAVKKYLYTGI 753
           G I I  + + + V+++ R L ED AVK+ L   I
Sbjct: 592 GMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSI 626


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 768 RSFRIYTGIKILFHSWIFCQSPKSHCYSIRQIRKLYL 658
           R  R+YTG ++ FH+  F    K+  + ++Q+ ++Y+
Sbjct: 823 RLTRVYTGQQLSFHANCFPNLKKALLWDLQQVNQIYI 859


>10_02_0041 +
           4486623-4486855,4487002-4487036,4487132-4487253,
           4487496-4487585,4487711-4487830,4487941-4488024,
           4488123-4488200,4488349-4488474,4488564-4488653,
           4489183-4489218,4489294-4489349,4489569-4489716,
           4489797-4490130,4491249-4491384,4491595-4491636,
           4491725-4491893,4492471-4492554,4492660-4492755
          Length = 692

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 173 WLKADIWLLGVILQIYFLSNSKIRNKCI 256
           W + D+WL+G+ L +  LS S   + CI
Sbjct: 494 WTEFDLWLMGIGLSVMILSVSTQASWCI 521


>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 542 NIGSQGMKVAPMKAKFSSLLQRETSMGNFFI 450
           +I   G+KV PM A FSSL     S GNF +
Sbjct: 404 HISGMGLKVVPMIAPFSSLRAINLS-GNFIV 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,889
Number of Sequences: 37544
Number of extensions: 329341
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)