Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c09
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_35287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 394 IQSGQSVLFSSTAEFLLQNMKKFPMEVSL-WSKEENLAFIGATFIPWDPMFLSYLEKIYN 570
           I    + L SST   L+ ++K+F   V L ++ +++   +G T + W+P   S   K   
Sbjct: 134 ITKAATTLISST---LVPSVKRFNSPVLLTFAHKQSSKGMGVTCVSWEPESYSNSWKDSG 190

Query: 571 CQEPPPVTLKEEYN 612
           CQ  P   +  EYN
Sbjct: 191 CQVVP--DMSNEYN 202


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 544 LSYLEKIYNCQEPPPVTLKEEYNVFEEGTAKLMAKLGIQIKLSYLSDRVT 693
           L+Y   +Y  +   PV+L ++   F++  A L AK+ + +KL++ S   T
Sbjct: 17  LNYNMDLYMIKNDEPVSLLKDSRAFKDFLAPLSAKIDV-VKLNWFSSPKT 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,159,115
Number of Sequences: 59808
Number of extensions: 402468
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)