Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c08
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    26   8.6  
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    26   8.6  
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133     26   8.6  
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    26   8.6  

>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 44  KGPEILCSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVC 193
           +GP++L     +V ++ L   +  CD  W+   + A A L   N  +K+C
Sbjct: 791 QGPKLLYPVFSNVRDVYLCNIFYECDLNWTVFVLEAAARL--SNFYLKLC 838


>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 FLQNVRQTMELRKHDCRSPTLLRKFPSESLFV 198
           F +N   T+     DCRSP+   ++P E LFV
Sbjct: 237 FFRNGLPTLVAYPADCRSPSCYMRYPGE-LFV 267


>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
          Length = 474

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 186 KFVRRW*H*NQQCNRKQRLPYNLLTELFLRINES 287
           KF+R W H  ++  R  RLP    ++  LRI +S
Sbjct: 33  KFLRDWRHKKERTARPDRLPLPKSSKKGLRIEDS 66


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 142 HDCRSPTLLRKFPSESLFVGGNTKINSA 225
           HDC+SP + R     ++ + GN K   A
Sbjct: 132 HDCKSPIIHRDIKPTNILLDGNLKAKIA 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,902,320
Number of Sequences: 37544
Number of extensions: 110037
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)