Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c08
         (377 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   0.92 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           22   8.6  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    22   8.6  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 HDCRSPTLLRKFPSESLFVGGN 207
           HDC S   LR  PS+ LFV G+
Sbjct: 205 HDCISSFTLRLKPSDLLFVIGD 226


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 160 TLLRKFPSESLFVGGNTKINSATGSKDYH 246
           T L  + S + ++G   ++ +A  S D+H
Sbjct: 837 TTLMSYSSNNDYIGSLVQVKNALVSSDHH 865


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 158 PLCCENSQVKVCSSVVTLK 214
           PL C ++  KV SSV+T K
Sbjct: 536 PLTCLSNLNKVLSSVITQK 554


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,968
Number of Sequences: 2352
Number of extensions: 4746
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)