Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11c08
(377 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 28 2.5
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 28 2.5
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 28 2.5
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 27 3.4
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 3.4
AF016442-1|AAB65918.1| 340|Caenorhabditis elegans Hypothetical ... 27 3.4
Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical pr... 27 4.5
U40797-3|AAB37550.2| 238|Caenorhabditis elegans Saposin-like pr... 27 5.9
U40797-2|AAB37549.2| 429|Caenorhabditis elegans Saposin-like pr... 27 5.9
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 26 7.8
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 178 PSESLFVGGN-TKINSATGSKDYHI 249
PSESLFVGG I + GSK Y +
Sbjct: 20 PSESLFVGGRVVTIETDNGSKRYEL 44
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 178 PSESLFVGGN-TKINSATGSKDYHI 249
PSESLFVGG I + GSK Y +
Sbjct: 20 PSESLFVGGRVVTIETDNGSKRYEL 44
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 178 PSESLFVGGN-TKINSATGSKDYHI 249
PSESLFVGG I + GSK Y +
Sbjct: 18 PSESLFVGGRVVTIETDNGSKRYEL 42
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 62 CSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVC--SSVVTLKSTVQ 226
C +NE + S+ +TC Y + A AP+ C+ S + C S V TVQ
Sbjct: 94 CQFAPSMNECQ-SSCQQTCQTSSCYTQIAAPAPVQCQPSCMPACEQSCVAPAPVTVQ 149
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 62 CSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVC--SSVVTLKSTVQ 226
C +NE + S+ +TC Y + A AP+ C+ S + C S V TVQ
Sbjct: 95 CQFAPSMNECQ-SSCQQTCQTSSCYTQIAAPAPVQCQPSCMPACEQSCVAPAPVTVQ 150
>AF016442-1|AAB65918.1| 340|Caenorhabditis elegans Hypothetical
protein K12B6.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 130 ELRKHDCRSPTLLRKFPSESLFVGGNTKIN 219
E R HDC+ T LRKF L G K++
Sbjct: 137 ETRTHDCKDLTRLRKFFEAVLAYTGYAKVS 166
>Z37139-5|CAA85490.1| 558|Caenorhabditis elegans Hypothetical
protein C14B1.9 protein.
Length = 558
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 41 AKGPEILCSRLKDVNELKLSAFYKTCDKPWSYANMTAEAPLCCENSQVKVCSSVVTLK 214
AK PE + + +D+ E A CDK + A A +C +N + KV S + ++
Sbjct: 78 AKNPETMKAMCRDMTEASKCATAAGCDKIFIGAISNAFQFVCMDNLE-KVSSQIACIQ 134
>U40797-3|AAB37550.2| 238|Caenorhabditis elegans Saposin-like
protein family protein10, isoform a protein.
Length = 238
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KGPEILCSRLKDVNELKLSAFYKTCDKPWSYANMTAEAP-LCCENSQ--VKVCSSVVTLK 214
K P +C+RL + K+ +F + + A T +AP + C+ Q VK +VV K
Sbjct: 97 KNPHAVCTRLHICSNKKIDSFRRILLEFAKRAQKTFDAPAIVCDECQFVVKELKTVVEDK 156
Query: 215 STVQPEAK 238
+ Q EA+
Sbjct: 157 KS-QAEAR 163
>U40797-2|AAB37549.2| 429|Caenorhabditis elegans Saposin-like
protein family protein10, isoform b protein.
Length = 429
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KGPEILCSRLKDVNELKLSAFYKTCDKPWSYANMTAEAP-LCCENSQ--VKVCSSVVTLK 214
K P +C+RL + K+ +F + + A T +AP + C+ Q VK +VV K
Sbjct: 97 KNPHAVCTRLHICSNKKIDSFRRILLEFAKRAQKTFDAPAIVCDECQFVVKELKTVVEDK 156
Query: 215 STVQPEAK 238
+ Q EA+
Sbjct: 157 KS-QAEAR 163
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 328 INANTVRFIYNFYRLSFIRKNNSVNKLYGSLCFRLH 221
I V IYN +S +RK +++ ++ + FRLH
Sbjct: 604 IQRTLVPEIYNGIGMSIMRKMSALQEIKAEVAFRLH 639
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,399,201
Number of Sequences: 27780
Number of extensions: 110139
Number of successful extensions: 318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -