Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c06
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   0.91 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.5  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   8.5  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     24   8.5  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 220 NPCAKPACCSNE-YWCYTRHRPTSTLQE---TTTLRRRDCLYQWRRNC 351
           +P  KP+CCS E   C +  +P+   QE     +  +  C  Q +++C
Sbjct: 232 SPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC 279


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 214 CWNPCAKPACCSNEYWCYTRHR 279
           C+ PC K   C N +  +  HR
Sbjct: 585 CFRPCNKKLSCGNHFCQHMCHR 606


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 VPILFSYYYCSYILK*FKC 411
           VPI F+Y Y   ++  FKC
Sbjct: 117 VPITFAYLYALAVVSMFKC 135


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 227 VQSQPAAAMSTGAIPDIDLPA 289
           V  +PAA  STGAIP ++ PA
Sbjct: 51  VSQEPAAISSTGAIP-LNSPA 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,051
Number of Sequences: 5004
Number of extensions: 20497
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)