Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    29   0.50 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   3.5  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = -1

Query: 680 ITSIFNWXEDVXVYISIQFYC---NRNNLHCSNHLNTSDLLPHFWI--QNIY 540
           I  +F +  ++ +YI  QFYC   +RN     N  + S+   +FW+  QN++
Sbjct: 454 IKKVFEYRLNLDLYILKQFYCHYLDRNRKPPLNIKSVSESFKNFWVYLQNVF 505


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +3

Query: 300  SNLLLRFTIQ-FLPLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLTTGSYTMITVLSWT 476
            +N+ +  ++Q F+ +  N+     ++T  Y  YN      + T  +  G Y +  VLSW 
Sbjct: 1360 NNMFIMLSVQLFMVVLINLGAIYHVVTVCY--YNGNQKLSYDTSIVPRGCYQLGPVLSWL 1417

Query: 477  KSKRRSLFVSFTIITFLLLCEIYVLNPKMWQ 569
            K    S+F+ F  I+F+ L    ++   +W+
Sbjct: 1418 KRCVISIFIVFW-ISFIPLTVHELIERGVWR 1447


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 189  DKMDAEDVYAENTWTYLSMCTEPTVYEGLKFAKDILFSNLLLRFTIQ 329
            DK    D+Y  +   Y   CT+      L F KD L + LL   T++
Sbjct: 1161 DKAREFDLYPPSMQRYCDSCTQDWRNRTLFFGKDTLATRLLTLETVE 1207


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 301  ENKISLANFSPSYTVGSVHIDRYVQVFSA*TSSASILSNFFR 176
            E  + L+ F   YT+  V ID Y +   A     S L+N FR
Sbjct: 1013 EKLLELSRFDQIYTLIVVDIDTYYEKRMAALKIKSFLANNFR 1054


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 320 YHSVFTITS*CQTQFISYYGSLLT-VQQHWVSNFLDNRANYWILYNDHSAIV 472
           YHS+          F+    S L  + +H + N LDN  NY  L+N   +I+
Sbjct: 438 YHSLIERLDLFTPSFVLIQSSALGFLTRHAIVNMLDNLYNYIPLFNRMQSIL 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,911
Number of Sequences: 5004
Number of extensions: 61579
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)