Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11c05
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333...    30   1.6  
06_03_0570 - 22363197-22363588,22363755-22366782                       29   4.8  
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436...    28   6.4  
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864...    28   8.4  

>03_06_0027 +
           31131621-31131676,31131681-31132350,31133152-31133319,
           31134771-31134986,31135593-31135909,31136058-31136169,
           31136256-31136492,31136582-31137172
          Length = 788

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 291 ILFSNLLLRFTIQFLPLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLTTGSY 449
           ++ + LLL F +QFLP    V HS+ ++  +  +   I   I+W  GL   +Y
Sbjct: 316 LIMTMLLLLFLLQFLP---KVYHSIYIMRKMQKVTGYIFGTIWWGFGLNLFAY 365


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 363 LSLITGVYLLYNNIGSAIFWTIGLTTGSYTMITVLSWTK 479
           LS I  +YL YNN+  +I  ++G +T  Y+++  L+W +
Sbjct: 296 LSSIQFLYLSYNNLSGSIPSSLGNSTSLYSLL--LAWNE 332


>04_04_0075 -
           22542486-22542882,22543181-22543362,22543452-22543637,
           22543959-22544057,22546198-22546314,22547739-22547855
          Length = 365

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 488 EVTVCVIYNNHISSIMRNICFESKNVATDQRYSDDCCN 601
           +++V +  N+ I+S ++N C      A D+ + D CC+
Sbjct: 197 DLSVDIEQNSSITSCLKNFCSTETLNAEDKFFCDKCCS 234


>03_05_0541 +
           25381403-25382077,25382555-25383904,25386267-25386402,
           25386642-25387126
          Length = 881

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 144 RKFKNTGKLCVLKKFDKMDAEDVYAENTWTYLSMCTEPTVY 266
           +K     K+   K+  K  AED     TW Y S+C E   Y
Sbjct: 455 KKIDEVSKVNEPKEEQKSGAEDGEQSQTWRYNSLCREALRY 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,940
Number of Sequences: 37544
Number of extensions: 323957
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)